BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0645600 Os02g0645600|AK109477
(387 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0645600 Similar to AG-motif binding protein-3 363 e-101
Os04g0539500 Zinc finger, GATA-type domain containing protein 148 6e-36
Os01g0745700 Similar to GATA transcription factor 3 (AtGATA-3) 122 3e-28
Os05g0520300 Similar to GATA transcription factor 3 (AtGATA-3) 122 6e-28
Os10g0557600 Zinc finger, GATA-type domain containing protein 121 7e-28
Os12g0624900 Similar to GATA transcription factor 2 (AtGATA-2) 114 2e-25
Os03g0145200 Zinc finger, GATA-type domain containing protein 112 4e-25
Os11g0187200 107 1e-23
Os12g0168800 Similar to AG-motif binding protein-2 102 5e-22
Os10g0458800 100 3e-21
Os03g0130600 97 3e-20
>Os02g0645600 Similar to AG-motif binding protein-3
Length = 387
Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/373 (55%), Positives = 206/373 (55%)
Query: 1 MSSFAHHHHGSLVEKDGRMSALRSSLRPYXXXXXXXXXXXXXXXXXXXXXVERGAGMMGD 60
MSSFAHHHHGSLVEKDGRMSALRSSLRPY VERGAGMMGD
Sbjct: 1 MSSFAHHHHGSLVEKDGRMSALRSSLRPYEAAEEMAAAAAAGGPAAAWGAVERGAGMMGD 60
Query: 61 GFSVXXXXXXXXXXXXXXXGGEQGEXXXXXXXXVEKERXXXXXXXXXXXYEXXXXXXXXX 120
GFSV GGEQGE VEKER YE
Sbjct: 61 GFSVEDLLDLEELCEVDRDGGEQGEAAAAAAAAVEKERSSDSHGSSVVSYEPMPLLPPVM 120
Query: 121 XXXAHDVEELEWVSRIMDDSXXXXXXXXXXXXXXXXXXCGKPQHRRPHEGAASALLDPMR 180
AHDVEELEWVSRIMDDS CGKPQHRRPHEGAASALLDPMR
Sbjct: 121 DLPAHDVEELEWVSRIMDDSLAELPLPQLPAAAAALAACGKPQHRRPHEGAASALLDPMR 180
Query: 181 TPTICALSTEALVPVXXXXXXXXXXXVWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFL 240
TPTICALSTEALVPV VW PFL
Sbjct: 181 TPTICALSTEALVPVKSRRSKRSRASVWSLSGAPLSDSTSSSSTATTSSCSSSASFSPFL 240
Query: 241 QYVDFPALVASDLLDEQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
QYVDFPALVASDLLDEQP
Sbjct: 241 QYVDFPALVASDLLDEQPRSKKSKHGKNGKQKPKKRGRKPKHQQPPHLAAAAGGGAALPA 300
Query: 301 TGDRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNS 360
TGDRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNS
Sbjct: 301 TGDRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNS 360
Query: 361 HRKVLEMRRKKET 373
HRKVLEMRRKKET
Sbjct: 361 HRKVLEMRRKKET 373
>Os04g0539500 Zinc finger, GATA-type domain containing protein
Length = 198
Score = 148 bits (374), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 303 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHR 362
DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVS++HSNSHR
Sbjct: 110 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHR 169
Query: 363 KVLEMRRKKE 372
KVLEMRRKKE
Sbjct: 170 KVLEMRRKKE 179
>Os01g0745700 Similar to GATA transcription factor 3 (AtGATA-3)
Length = 387
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 59/69 (85%)
Query: 304 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHRK 363
RRC HC KTPQWR GP G KTLCNACGVRYKSGRL+PEYRPA SPTF+ S HSNSHRK
Sbjct: 262 RRCLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMVSKHSNSHRK 321
Query: 364 VLEMRRKKE 372
VLE+RR+KE
Sbjct: 322 VLELRRQKE 330
>Os05g0520300 Similar to GATA transcription factor 3 (AtGATA-3)
Length = 386
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 55/69 (79%), Positives = 59/69 (85%)
Query: 304 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHRK 363
RRC HC KTPQWR GP G KTLCNACGVRYKSGRL+PEYRPA SPTFV S HSNSHRK
Sbjct: 253 RRCLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVVSKHSNSHRK 312
Query: 364 VLEMRRKKE 372
V+E+RR+KE
Sbjct: 313 VVELRRQKE 321
>Os10g0557600 Zinc finger, GATA-type domain containing protein
Length = 260
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 62/71 (87%)
Query: 302 GDRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSH 361
G RRC+HC +KTPQWR GP G KTLCNACGVR+KSGRL+PEYRPA SPTFV + HSNSH
Sbjct: 147 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSH 206
Query: 362 RKVLEMRRKKE 372
RKV+E+RR+KE
Sbjct: 207 RKVMELRRQKE 217
>Os12g0624900 Similar to GATA transcription factor 2 (AtGATA-2)
Length = 309
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 57/66 (86%)
Query: 304 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHRK 363
+RC+HC KTPQWR GP G KTLCNACGVR+KSGRLLPEYRPA SPTFVS +HSNSH+K
Sbjct: 237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKK 296
Query: 364 VLEMRR 369
V+++R
Sbjct: 297 VMQLRN 302
>Os03g0145200 Zinc finger, GATA-type domain containing protein
Length = 219
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 48/67 (71%), Positives = 56/67 (83%)
Query: 306 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHRKVL 365
C+HC V +TPQWR GP+G +TLCNACGVR+KSGRL PEYRPA SPTF LHSNSHR+V+
Sbjct: 124 CTHCAVDETPQWRLGPDGPRTLCNACGVRFKSGRLFPEYRPANSPTFSPLLHSNSHRRVM 183
Query: 366 EMRRKKE 372
EMR + E
Sbjct: 184 EMRLQSE 190
>Os11g0187200
Length = 431
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 54/69 (78%)
Query: 303 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHR 362
DRRCSHCG +TPQWR GP+G TLCNACG+R K RLLPEYRP+ SP+F HSN HR
Sbjct: 360 DRRCSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDRLLPEYRPSTSPSFNGDEHSNRHR 419
Query: 363 KVLEMRRKK 371
KVL++R KK
Sbjct: 420 KVLKLREKK 428
>Os12g0168800 Similar to AG-motif binding protein-2
Length = 414
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 53/66 (80%)
Query: 306 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHRKVL 365
C HCG +TPQWR GP G TLCNACGVRY+ GRLLPEYRP SPTF S+H+ +HR+VL
Sbjct: 279 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRLLPEYRPKGSPTFSPSVHAANHRQVL 338
Query: 366 EMRRKK 371
E+RR++
Sbjct: 339 ELRRQQ 344
>Os10g0458800
Length = 528
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 53/66 (80%)
Query: 305 RCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHRKV 364
+C HCG +TPQWR GPEG +TLCNAC +RY+SG+L+PEYRP SPTF LHSN H +V
Sbjct: 64 QCRHCGTTETPQWRHGPEGHRTLCNACSMRYRSGKLVPEYRPLRSPTFSPELHSNRHHRV 123
Query: 365 LEMRRK 370
L++RR+
Sbjct: 124 LQLRRR 129
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 49/71 (69%), Gaps = 4/71 (5%)
Query: 303 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHR 362
+RRC+HCG KTP W +GP+ LCNACG +Y+ GRL+PEYRP PTF LHSN+H
Sbjct: 452 ERRCTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRLVPEYRPLNCPTFSPELHSNAH- 510
Query: 363 KVLEMRRKKET 373
RR++E+
Sbjct: 511 ---AHRRRRES 518
>Os03g0130600
Length = 271
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 303 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHR 362
++RC HC +TPQWR GP+G TLCNACG+RY+ LLPEYRP+ SP F S +SN HR
Sbjct: 185 EKRCGHCQTTETPQWRVGPDGPSTLCNACGIRYRIDHLLPEYRPSTSPGFGSDGYSNRHR 244
Query: 363 KVLEMRRKK 371
KV+++R KK
Sbjct: 245 KVVKLREKK 253
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,539,417
Number of extensions: 202242
Number of successful extensions: 483
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 481
Number of HSP's successfully gapped: 13
Length of query: 387
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 284
Effective length of database: 11,657,759
Effective search space: 3310803556
Effective search space used: 3310803556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)