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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0557600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, GATA-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.6 (0.0706) R2 : 0.112
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.629 (0.18) R2dC : 0.0246 R2C : 0.0113
β3 : -0.917 (0.253) R2dE : 0.0274 R2E : 0.0352
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.7 (0.152) R2dN8 : 0.0563 R2N8 : 0.0593
σ : 1.31
deviance : 795.82
__
_____
C
peak time of C : 7.65
E
wheather : atmosphere
threshold : 1006
memory length : 5415
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
770.84 1.3 4.58 -0.384 0.635 -0.947 2.24 -1.58 -0.71 8.14 1006 5416 -- --
774.77 1.3 4.59 -0.529 0.633 -1.02 2.3 -- -0.721 8.1 1006 5428 -- --
785.63 1.31 4.58 -0.314 0.644 -0.935 -- -1.68 -0.719 7.69 1006 5451 -- --
790.11 1.31 4.6 -0.47 0.639 -0.969 -- -- -0.728 7.6 1006 5411 -- --
807.98 1.32 4.6 -0.311 -- -0.959 -- -1.58 -0.708 -- 1006 5468 -- --
801.77 1.33 4.63 -0.394 0.649 -- 2.18 -- -0.865 8.13 -- -- -- --
816.01 1.34 4.63 -0.333 0.654 -- -- -- -0.868 7.79 -- -- -- --
811.96 1.33 4.62 -0.463 -- -0.987 -- -- -0.721 -- 1006 5447 -- --
795.82 1.31 4.6 -- 0.629 -0.917 -- -- -0.7 7.65 1006 5415 -- --
839.17 1.35 4.65 -0.325 -- -- -- -- -0.858 -- -- -- -- --
818.94 1.34 4.62 -- 0.652 -- -- -- -0.831 7.82 -- -- -- --
817.53 1.33 4.61 -- -- -0.935 -- -- -0.677 -- 1006 5452 -- --
841.96 1.35 4.64 -- -- -- -- -- -0.822 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 754.78 precipitation 0.1 14400 > th dose dependent rect. 17 1
2 754.87 temperature 20.0 30 < th dose independent rect. 4 18
13 758.66 humidity 90.0 14400 < th dose dependent rect. 4 1
14 759.16 humidity 80.0 14400 > th dose independent rect. 4 1
15 759.16 humidity 80.0 14400 < th dose independent rect. 4 1
40 760.24 temperature 20.0 30 > th dose independent sin 23 NA
42 760.29 precipitation 0.1 1440 < th dose independent rect. 5 7
43 760.29 precipitation 0.1 1440 < th dose dependent rect. 5 7
56 760.81 precipitation 0.1 1440 < th dose independent rect. 5 4
57 760.81 precipitation 0.1 1440 < th dose dependent rect. 5 4
69 761.34 temperature 20.0 30 < th dose independent sin 23 NA
72 761.44 precipitation 0.1 14400 > th dose independent rect. 17 1
75 761.53 temperature 25.0 10 < th dose dependent rect. 4 18
79 761.64 precipitation 0.1 14400 < th dose independent rect. 17 1
80 761.64 precipitation 0.1 14400 < th dose dependent rect. 17 1
82 761.70 precipitation 0.1 1440 > th dose dependent rect. 5 8
90 761.92 precipitation 0.1 1440 > th dose dependent rect. 5 6
94 762.15 temperature 20.0 90 < th dose independent rect. 1 21
95 762.21 precipitation 0.1 1440 > th dose dependent rect. 5 4
98 762.26 humidity 80.0 14400 < th dose dependent rect. 23 8
101 762.32 precipitation 0.1 1440 > th dose independent rect. 5 8
111 762.52 precipitation 0.1 1440 > th dose independent rect. 5 6
119 762.66 precipitation 0.1 1440 > th dose independent rect. 5 3
130 762.88 humidity 80.0 14400 < th dose dependent rect. 23 4
136 762.96 humidity 80.0 14400 < th dose dependent rect. 23 2
139 763.07 wind 3.0 14400 < th dose independent rect. 2 1
167 763.88 humidity 80.0 1440 < th dose independent rect. 9 3
171 764.11 atmosphere 1005.0 4320 > th dose independent rect. 22 1
174 764.22 humidity 80.0 1440 > th dose independent rect. 9 3
179 764.50 humidity 80.0 1440 > th dose independent rect. 11 1
180 764.55 humidity 80.0 1440 < th dose independent rect. 11 1
183 764.59 temperature 20.0 10 < th dose independent rect. 2 21
189 764.70 humidity 80.0 4320 > th dose independent rect. 9 1
193 764.81 wind 3.0 14400 > th dose independent rect. 2 1
201 765.06 atmosphere 1000.0 90 < th dose dependent rect. 7 2
220 765.50 temperature 25.0 90 < th dose dependent rect. 1 21
222 765.54 humidity 70.0 1440 > th dose dependent rect. 9 3
246 766.35 humidity 90.0 4320 > th dose dependent rect. 9 1
253 766.59 humidity 80.0 1440 > th dose dependent rect. 5 7
259 766.67 atmosphere 1005.0 4320 < th dose independent rect. 22 1
271 766.81 radiation 10.0 4320 < th dose independent rect. 9 1
273 766.88 wind 5.0 1440 > th dose dependent rect. 17 10
278 767.01 atmosphere 1010.0 4320 < th dose dependent rect. 23 2
287 767.16 wind 5.0 1440 > th dose dependent rect. 17 16
359 767.99 wind 3.0 14400 < th dose independent rect. 1 6
367 768.10 wind 5.0 1440 > th dose independent rect. 17 10
368 768.10 wind 5.0 1440 > th dose independent rect. 17 17
397 768.31 atmosphere 1000.0 10 < th dose dependent rect. 7 3
427 768.57 humidity 80.0 1440 < th dose independent rect. 4 8
433 768.60 wind 3.0 14400 > th dose independent rect. 1 6
453 768.76 wind 5.0 1440 < th dose independent rect. 17 8
464 768.86 humidity 80.0 1440 > th dose independent rect. 4 8
497 769.03 atmosphere 1005.0 4320 > th dose independent rect. 24 1
501 769.04 wind 5.0 1440 < th dose independent rect. 17 17
564 769.36 atmosphere 1005.0 43200 > th dose independent rect. 3 1
675 770.08 radiation 10.0 4320 < th dose dependent rect. 8 2
686 770.12 atmosphere 1005.0 14400 < th dose independent rect. 1 1
695 770.16 atmosphere 1000.0 4320 < th dose dependent rect. 7 1
707 770.26 atmosphere 1005.0 43200 < th dose independent rect. 22 6
713 770.29 temperature 20.0 90 < th dose independent rect. 19 2
755 770.50 atmosphere 1005.0 43200 < th dose independent rect. 3 2
765 770.59 atmosphere 1005.0 4320 > th dose independent sin 13 NA
769 770.61 atmosphere 1005.0 43200 > th dose independent rect. 22 7
788 770.71 wind 5.0 1440 > th dose dependent sin 11 NA
796 770.74 humidity 80.0 1440 > th dose independent rect. 23 13
824 770.86 atmosphere 1005.0 4320 < th dose independent sin 13 NA
846 770.98 atmosphere 1005.0 43200 > th dose independent rect. 24 5
861 771.06 humidity 90.0 1440 > th dose independent rect. 7 1
864 771.06 precipitation 0.1 4320 < th dose independent rect. 4 13
865 771.06 precipitation 0.1 4320 < th dose dependent rect. 4 13
875 771.10 wind 3.0 14400 < th dose independent rect. 5 2
883 771.13 precipitation 0.1 4320 > th dose independent rect. 4 13
894 771.16 wind 5.0 10 > th dose dependent rect. 19 3
898 771.17 precipitation 0.1 1440 < th dose independent rect. 1 15
900 771.17 precipitation 0.1 1440 < th dose dependent rect. 1 15
924 771.28 precipitation 0.1 1440 > th dose independent rect. 1 15
926 771.30 wind 3.0 14400 > th dose independent rect. 5 2
960 771.39 atmosphere 1000.0 4320 < th dose dependent rect. 22 3
964 771.40 humidity 80.0 1440 > th dose dependent sin 4 NA
965 771.41 atmosphere 1005.0 43200 < th dose independent rect. 11 1
982 771.49 wind 5.0 1440 < th dose independent rect. 19 2
986 771.49 atmosphere 1000.0 4320 < th dose dependent rect. 22 1
987 771.50 wind 5.0 1440 > th dose independent rect. 19 1