BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0557600 Os10g0557600|J075191F19
(260 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0557600 Zinc finger, GATA-type domain containing protein 273 7e-74
Os05g0520300 Similar to GATA transcription factor 3 (AtGATA-3) 136 1e-32
Os01g0745700 Similar to GATA transcription factor 3 (AtGATA-3) 135 3e-32
Os12g0624900 Similar to GATA transcription factor 2 (AtGATA-2) 125 3e-29
Os02g0645600 Similar to AG-motif binding protein-3 122 2e-28
Os04g0539500 Zinc finger, GATA-type domain containing protein 119 2e-27
Os03g0145200 Zinc finger, GATA-type domain containing protein 115 3e-26
Os11g0187200 102 4e-22
Os12g0168800 Similar to AG-motif binding protein-2 99 2e-21
Os03g0130600 94 1e-19
Os10g0458800 90 2e-18
>Os10g0557600 Zinc finger, GATA-type domain containing protein
Length = 260
Score = 273 bits (699), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 148/260 (56%), Positives = 148/260 (56%)
Query: 1 MAMDVCVDGVQTEDAAELEWLSKFVDDSYSDMPNYQXXXXXXXXXXXXXXXXXXXXXXXX 60
MAMDVCVDGVQTEDAAELEWLSKFVDDSYSDMPNYQ
Sbjct: 1 MAMDVCVDGVQTEDAAELEWLSKFVDDSYSDMPNYQSSAHAAMAAAAASAANNGGGSSAG 60
Query: 61 QDSCLTXXXXXXXXXXXXXXXXXXXXXWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTX 120
QDSCLT WH GT
Sbjct: 61 QDSCLTAAPGRGARSKRSRATAAAAAAWHSLVPRPPSQSSPSSSCSSSDFPSSNKPSGTA 120
Query: 121 XXXXXXXXXXXXXXXXXXXAEVGMEAGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRF 180
AEVGMEAGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRF
Sbjct: 121 RPNGSGGGSRGKKSPGPAGAEVGMEAGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRF 180
Query: 181 KSGRLMPEYRPAASPTFVLTQHSNSHRKVMELRRQKELLIIRGSHRDXXXXXXXXXXXXX 240
KSGRLMPEYRPAASPTFVLTQHSNSHRKVMELRRQKELLIIRGSHRD
Sbjct: 181 KSGRLMPEYRPAASPTFVLTQHSNSHRKVMELRRQKELLIIRGSHRDAAAAAAAAAAAAA 240
Query: 241 XXXXXXTGRPELMFRDYGVC 260
TGRPELMFRDYGVC
Sbjct: 241 AGSAAATGRPELMFRDYGVC 260
>Os05g0520300 Similar to GATA transcription factor 3 (AtGATA-3)
Length = 386
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 58/73 (79%), Positives = 70/73 (95%)
Query: 149 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSHRK 208
RRC HC ++KTPQWRTGP+GPKTLCNACGVR+KSGRL+PEYRPAASPTFV+++HSNSHRK
Sbjct: 253 RRCLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVVSKHSNSHRK 312
Query: 209 VMELRRQKELLII 221
V+ELRRQKE+ ++
Sbjct: 313 VVELRRQKEMQLL 325
>Os01g0745700 Similar to GATA transcription factor 3 (AtGATA-3)
Length = 387
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 57/70 (81%), Positives = 68/70 (97%)
Query: 149 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSHRK 208
RRC HC ++KTPQWRTGP+GPKTLCNACGVR+KSGRL+PEYRPAASPTF++++HSNSHRK
Sbjct: 262 RRCLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMVSKHSNSHRK 321
Query: 209 VMELRRQKEL 218
V+ELRRQKE+
Sbjct: 322 VLELRRQKEM 331
>Os12g0624900 Similar to GATA transcription factor 2 (AtGATA-2)
Length = 309
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 63/73 (86%)
Query: 141 EVGMEAGVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLT 200
E+ E ++RCTHC S KTPQWRTGPLGPKTLCNACGVRFKSGRL+PEYRPA SPTFV
Sbjct: 229 ELLSEEPMKRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSD 288
Query: 201 QHSNSHRKVMELR 213
HSNSH+KVM+LR
Sbjct: 289 IHSNSHKKVMQLR 301
>Os02g0645600 Similar to AG-motif binding protein-3
Length = 387
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 62/71 (87%)
Query: 147 GVRRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSH 206
G RRC+HC +KTPQWR GP G KTLCNACGVR+KSGRL+PEYRPA SPTFV + HSNSH
Sbjct: 302 GDRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSH 361
Query: 207 RKVMELRRQKE 217
RKV+E+RR+KE
Sbjct: 362 RKVLEMRRKKE 372
>Os04g0539500 Zinc finger, GATA-type domain containing protein
Length = 198
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 61/70 (87%)
Query: 149 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSHRK 208
RRC+HC +KTPQWR GP G KTLCNACGVR+KSGRL+PEYRPA SPTFV HSNSHRK
Sbjct: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
Query: 209 VMELRRQKEL 218
V+E+RR+KE+
Sbjct: 171 VLEMRRKKEV 180
>Os03g0145200 Zinc finger, GATA-type domain containing protein
Length = 219
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 56/67 (83%)
Query: 151 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSHRKVM 210
CTHCA ++TPQWR GP GP+TLCNACGVRFKSGRL PEYRPA SPTF HSNSHR+VM
Sbjct: 124 CTHCAVDETPQWRLGPDGPRTLCNACGVRFKSGRLFPEYRPANSPTFSPLLHSNSHRRVM 183
Query: 211 ELRRQKE 217
E+R Q E
Sbjct: 184 EMRLQSE 190
>Os11g0187200
Length = 431
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 54/68 (79%)
Query: 149 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSHRK 208
RRC+HC + +TPQWR GP GP TLCNACG+R K RL+PEYRP+ SP+F +HSN HRK
Sbjct: 361 RRCSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDRLLPEYRPSTSPSFNGDEHSNRHRK 420
Query: 209 VMELRRQK 216
V++LR +K
Sbjct: 421 VLKLREKK 428
>Os12g0168800 Similar to AG-motif binding protein-2
Length = 414
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 52/66 (78%)
Query: 151 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSHRKVM 210
C HC S +TPQWR GP G TLCNACGVR++ GRL+PEYRP SPTF + H+ +HR+V+
Sbjct: 279 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRLLPEYRPKGSPTFSPSVHAANHRQVL 338
Query: 211 ELRRQK 216
ELRRQ+
Sbjct: 339 ELRRQQ 344
>Os03g0130600
Length = 271
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 51/68 (75%)
Query: 149 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSHRK 208
+RC HC + +TPQWR GP GP TLCNACG+R++ L+PEYRP+ SP F +SN HRK
Sbjct: 186 KRCGHCQTTETPQWRVGPDGPSTLCNACGIRYRIDHLLPEYRPSTSPGFGSDGYSNRHRK 245
Query: 209 VMELRRQK 216
V++LR +K
Sbjct: 246 VVKLREKK 253
>Os10g0458800
Length = 528
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%)
Query: 150 RCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSHRKV 209
+C HC + +TPQWR GP G +TLCNAC +R++SG+L+PEYRP SPTF HSN H +V
Sbjct: 64 QCRHCGTTETPQWRHGPEGHRTLCNACSMRYRSGKLVPEYRPLRSPTFSPELHSNRHHRV 123
Query: 210 MELRRQ 215
++LRR+
Sbjct: 124 LQLRRR 129
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 149 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSHRK 208
RRCTHC + KTP W +GP LCNACG +++ GRL+PEYRP PTF HSN+H
Sbjct: 453 RRCTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRLVPEYRPLNCPTFSPELHSNAH-- 510
Query: 209 VMELRRQKELLI 220
RR+ + I
Sbjct: 511 AHRRRRESPVAI 522
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,156,455
Number of extensions: 156606
Number of successful extensions: 428
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 14
Length of query: 260
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 161
Effective length of database: 11,866,615
Effective search space: 1910525015
Effective search space used: 1910525015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)