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Os03g0145200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, GATA-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.75 (0.0232) R2 : 0.7
β1 : 1.12 (0.0849) R2dD : 0.119 R2D : 0.0898
β2 : 1.8 (0.0595) R2dC : 0.6 R2C : 0.578
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.231 (0.0495) R2dN8 : 0.0192 R2N8 : -0.00709
σ : 0.436
deviance : 86.6
__
_____
C
peak time of C : 16.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.19 0.402 9.75 1.28 1.72 -0.813 -0.445 0.44 0.217 16.8 81.58 1170 -- --
73.43 0.399 9.76 1.24 1.71 -0.782 -0.486 -- 0.21 16.7 81.23 1179 -- --
73.68 0.4 9.75 1.29 1.72 -0.826 -- 0.541 0.218 16.8 82.49 1160 -- --
74.03 0.401 9.76 1.24 1.72 -0.776 -- -- 0.209 16.8 82.2 1167 -- --
194.25 0.653 9.74 1.04 -- 1.52 -- 0.0377 0.205 -- 90 1220 -- --
86.07 0.435 9.75 1.12 1.8 -- -0.443 -- 0.233 16.4 -- -- -- --
86.6 0.436 9.75 1.12 1.8 -- -- -- 0.231 16.4 -- -- -- --
187.57 0.641 9.74 1.07 -- 1.65 -- -- 0.174 -- 136.7 1906 -- --
111.2 0.491 9.78 -- 1.7 -0.672 -- -- 0.125 16.7 116.5 1221 -- --
259.53 0.753 9.74 1.05 -- -- -- -- 0.183 -- -- -- -- --
119.66 0.512 9.78 -- 1.78 -- -- -- 0.106 16.4 -- -- -- --
199.1 0.657 9.77 -- -- 1.8 -- -- 0.0589 -- 175.5 221 -- --
288.59 0.793 9.77 -- -- -- -- -- 0.067 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.67 humidity 80.0 720 < th dose dependent rect. 20 1
5 66.27 humidity 80.0 720 < th dose independent rect. 20 1
9 67.95 humidity 80.0 720 < th dose independent rect. 19 3
14 68.50 temperature 30.0 720 > th dose dependent rect. 18 1
42 68.67 temperature 25.0 90 < th dose independent rect. 3 4
46 68.80 wind 1.0 270 < th dose independent rect. 4 1
49 68.91 wind 5.0 10 < th dose dependent rect. 3 6
51 68.97 wind 5.0 90 < th dose dependent rect. 3 3
52 68.97 humidity 80.0 720 < th dose dependent rect. 18 14
58 69.21 wind 1.0 270 > th dose independent rect. 2 2
62 69.38 temperature 25.0 270 < th dose independent rect. 1 4
65 69.48 wind 5.0 270 < th dose independent rect. 1 4
69 69.55 wind 3.0 10 < th dose dependent rect. 4 2
72 69.58 humidity 80.0 720 > th dose independent rect. 19 7
74 69.61 wind 5.0 90 < th dose independent rect. 3 3
110 70.20 wind 1.0 270 < th dose dependent rect. 4 1
112 70.24 precipitation 0.1 90 < th dose independent rect. 3 3
113 70.24 precipitation 0.1 90 < th dose dependent rect. 3 3
127 70.44 temperature 30.0 720 > th dose independent rect. 18 1
149 70.53 temperature 25.0 90 < th dose independent rect. 4 1
150 70.53 humidity 80.0 720 > th dose independent rect. 20 2
155 70.57 humidity 50.0 720 > th dose dependent rect. 19 7
165 70.64 wind 9.0 90 < th dose independent rect. 6 21
167 70.65 atmosphere 1005.0 90 > th dose independent rect. 3 3
168 70.65 humidity 60.0 90 > th dose dependent rect. 21 6
169 70.66 humidity 80.0 720 > th dose independent rect. 19 4
174 70.67 humidity 50.0 90 > th dose dependent rect. 19 8
175 70.70 wind 9.0 90 < th dose dependent rect. 6 21
177 70.73 wind 5.0 270 < th dose independent rect. 3 1
183 70.81 wind 5.0 10 < th dose independent rect. 3 3
184 70.82 atmosphere 1005.0 90 > th dose independent rect. 3 5
190 70.86 precipitation 0.1 270 < th dose independent rect. 3 1
193 70.86 temperature 10.0 90 > th dose independent rect. 3 3
196 70.86 humidity 50.0 90 > th dose independent rect. 3 3
199 70.86 atmosphere 995.0 90 > th dose independent rect. 3 3
200 70.86 atmosphere 1010.0 90 < th dose independent rect. 3 3
202 70.86 radiation 20.0 90 < th dose independent rect. 3 3
205 70.86 temperature 10.0 90 > th dose independent rect. 6 21
206 70.86 precipitation 0.1 270 < th dose dependent rect. 3 1
232 71.09 radiation 40.0 90 < th dose dependent rect. 3 3
239 71.13 temperature 10.0 270 > th dose independent rect. 1 4
242 71.13 humidity 50.0 270 > th dose independent rect. 1 4
245 71.13 atmosphere 995.0 270 > th dose independent rect. 1 4
246 71.13 atmosphere 1010.0 270 < th dose independent rect. 1 4
248 71.13 radiation 20.0 270 < th dose independent rect. 1 4
251 71.13 atmosphere 1005.0 270 > th dose independent rect. 1 5
270 71.15 radiation 1.0 270 < th dose dependent rect. 2 3
271 71.15 radiation 30.0 270 < th dose dependent rect. 1 4
276 71.17 atmosphere 1005.0 10 > th dose independent rect. 3 6
280 71.18 atmosphere 1000.0 90 > th dose independent rect. 21 6
285 71.21 radiation 1.0 270 < th dose independent rect. 1 4
288 71.21 temperature 30.0 270 < th dose dependent rect. 1 4
293 71.22 humidity 50.0 90 > th dose dependent rect. 3 3
301 71.26 precipitation 0.1 90 < th dose independent rect. 6 21
302 71.26 precipitation 0.1 90 < th dose dependent rect. 6 21
303 71.27 atmosphere 1000.0 90 > th dose independent rect. 19 8
315 71.33 humidity 80.0 720 > th dose dependent rect. 22 1
330 71.43 precipitation 0.1 10 < th dose independent rect. 3 3
332 71.43 precipitation 0.1 10 < th dose dependent rect. 3 3
337 71.52 humidity 90.0 90 > th dose independent rect. 4 1
339 71.53 wind 5.0 10 < th dose independent rect. 3 6
358 71.60 wind 9.0 90 < th dose dependent rect. 19 8
362 71.63 temperature 30.0 90 < th dose dependent rect. 3 4
375 71.68 precipitation 0.1 90 < th dose independent rect. 3 16
377 71.68 precipitation 0.1 90 < th dose dependent rect. 3 16
388 71.73 temperature 30.0 90 < th dose dependent rect. 3 2
394 71.75 radiation 40.0 90 < th dose dependent rect. 3 6
397 71.79 atmosphere 1015.0 90 < th dose dependent rect. 3 4
419 71.81 temperature 10.0 90 > th dose dependent rect. 3 3
422 71.82 precipitation 0.1 10 < th dose independent rect. 3 6
425 71.82 precipitation 0.1 10 < th dose dependent rect. 3 6
427 71.83 atmosphere 995.0 270 > th dose independent rect. 5 20
451 71.90 humidity 90.0 90 > th dose dependent rect. 4 1
481 72.00 atmosphere 1015.0 90 < th dose dependent rect. 4 1
495 72.07 temperature 10.0 90 > th dose dependent rect. 21 6
513 72.16 humidity 50.0 1440 < th dose independent rect. 16 1
517 72.18 precipitation 0.1 90 < th dose independent rect. 19 8
519 72.18 precipitation 0.1 90 < th dose dependent rect. 19 8
524 72.21 temperature 10.0 90 > th dose independent rect. 19 8
525 72.21 temperature 30.0 90 < th dose independent rect. 19 8
526 72.21 humidity 50.0 90 > th dose independent rect. 19 8
529 72.21 radiation 1.0 90 < th dose independent rect. 19 8
534 72.21 temperature 10.0 90 > th dose independent rect. 3 16
535 72.21 atmosphere 1015.0 90 < th dose independent rect. 3 16
538 72.21 radiation 1.0 90 < th dose dependent rect. 19 8
546 72.22 atmosphere 1015.0 270 < th dose dependent rect. 1 4
557 72.26 wind 9.0 90 < th dose independent rect. 19 8
562 72.27 atmosphere 1015.0 90 < th dose independent rect. 6 21
563 72.27 humidity 50.0 1440 < th dose dependent rect. 16 1
567 72.29 temperature 30.0 30 < th dose dependent rect. 3 6
569 72.30 temperature 10.0 270 > th dose independent rect. 3 1
572 72.30 humidity 50.0 270 > th dose independent rect. 3 1
575 72.30 atmosphere 995.0 270 > th dose independent rect. 3 1
576 72.30 atmosphere 1010.0 270 < th dose independent rect. 3 1
578 72.30 radiation 1.0 270 < th dose independent rect. 3 1
585 72.30 temperature 10.0 270 > th dose independent rect. 4 23
587 72.30 radiation 1.0 270 < th dose dependent rect. 3 1
595 72.32 precipitation 0.1 90 < th dose independent rect. 3 18
597 72.32 precipitation 0.1 90 < th dose dependent rect. 3 18
615 72.38 precipitation 0.1 10 < th dose independent rect. 6 21
616 72.38 wind 9.0 270 < th dose independent rect. 4 23
619 72.38 temperature 10.0 90 > th dose dependent rect. 6 21
620 72.38 precipitation 0.1 10 < th dose dependent rect. 6 21
622 72.41 wind 9.0 10 < th dose independent rect. 6 21
627 72.43 temperature 10.0 10 > th dose independent rect. 3 3
629 72.43 temperature 30.0 10 < th dose independent rect. 3 3
630 72.43 humidity 50.0 10 > th dose independent rect. 3 3
633 72.43 atmosphere 995.0 10 > th dose independent rect. 3 3
634 72.43 atmosphere 1010.0 10 < th dose independent rect. 3 3
636 72.43 radiation 20.0 10 < th dose independent rect. 3 3
641 72.43 temperature 10.0 10 > th dose independent rect. 6 21
645 72.43 wind 9.0 90 < th dose dependent rect. 21 6
661 72.48 atmosphere 1015.0 10 < th dose dependent rect. 4 2
664 72.48 radiation 1.0 90 < th dose dependent rect. 5 22
681 72.50 temperature 15.0 90 > th dose independent rect. 3 18
693 72.54 precipitation 0.1 270 < th dose independent rect. 1 16
696 72.54 precipitation 0.1 270 < th dose dependent rect. 1 16
700 72.55 temperature 10.0 90 > th dose independent rect. 21 6
701 72.55 temperature 30.0 90 < th dose independent rect. 21 6
702 72.55 humidity 50.0 90 > th dose independent rect. 21 6
706 72.55 radiation 1.0 90 < th dose independent rect. 21 6
712 72.55 atmosphere 1015.0 90 < th dose independent rect. 3 18
716 72.55 radiation 1.0 90 < th dose dependent rect. 21 6
723 72.56 temperature 10.0 10 > th dose dependent rect. 4 2
739 72.60 wind 9.0 90 < th dose independent rect. 21 6
775 72.64 precipitation 0.1 270 < th dose independent rect. 14 15
777 72.64 precipitation 0.1 270 < th dose dependent rect. 14 15
788 72.65 atmosphere 995.0 90 > th dose dependent rect. 3 3
795 72.66 temperature 10.0 10 > th dose independent rect. 3 6
797 72.66 temperature 30.0 10 < th dose independent rect. 3 6
798 72.66 humidity 50.0 10 > th dose independent rect. 3 6
800 72.66 atmosphere 995.0 10 > th dose independent rect. 3 6
801 72.66 atmosphere 1015.0 10 < th dose independent rect. 3 6
802 72.66 precipitation 0.1 90 < th dose independent rect. 21 6
804 72.66 temperature 10.0 10 > th dose independent rect. 9 18
805 72.66 precipitation 0.1 10 < th dose independent rect. 9 18
808 72.66 precipitation 0.1 90 < th dose dependent rect. 21 6
809 72.66 precipitation 0.1 10 < th dose dependent rect. 9 18
817 72.68 temperature 10.0 90 > th dose dependent rect. 19 8
827 72.71 atmosphere 1000.0 10 > th dose independent rect. 21 6
828 72.71 wind 9.0 10 < th dose independent rect. 9 18
861 72.74 humidity 50.0 10 > th dose dependent rect. 4 2
885 72.76 wind 9.0 90 < th dose independent rect. 3 16
897 72.78 humidity 70.0 720 < th dose independent rect. 18 14
900 72.78 temperature 10.0 10 > th dose dependent rect. 6 22
912 72.81 temperature 10.0 270 > th dose dependent rect. 19 6
913 72.81 humidity 50.0 10 > th dose dependent rect. 3 6
942 72.86 temperature 20.0 90 > th dose independent rect. 21 6
956 72.90 wind 9.0 270 < th dose independent rect. 5 9
957 72.90 atmosphere 995.0 90 > th dose independent rect. 3 16
963 72.91 humidity 80.0 720 > th dose independent rect. 19 13