Os12g0168800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AG-motif binding protein-2.
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Os12g0168800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AG-motif binding protein-2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.88 | 0.209 | 9.8 | 0.763 | 0.274 | -0.566 | -0.569 | 0.275 | 0.167 | 15.8 | 1.549 | 1432 | -- | -- |
| 19.85 | 0.208 | 9.8 | 0.726 | 0.268 | -0.592 | -0.604 | -- | 0.17 | 16.3 | 1.51 | 1406 | -- | -- |
| 20.75 | 0.212 | 9.8 | 0.763 | 0.269 | -0.546 | -- | 0.351 | 0.165 | 15.9 | 1.508 | 1410 | -- | -- |
| 20.64 | 0.212 | 9.8 | 0.706 | 0.244 | -0.56 | -- | -- | 0.156 | 16.9 | 1.41 | 1361 | -- | -- |
| 23.82 | 0.227 | 9.79 | 0.759 | -- | -0.622 | -- | 0.374 | 0.172 | -- | 1.59 | 1368 | -- | -- |
| 25.02 | 0.234 | 9.82 | 0.626 | 0.288 | -- | -0.489 | -- | 0.0762 | 15.7 | -- | -- | -- | -- |
| 25.69 | 0.237 | 9.82 | 0.618 | 0.285 | -- | -- | -- | 0.0733 | 15.4 | -- | -- | -- | -- |
| 23.91 | 0.228 | 9.79 | 0.727 | -- | -0.609 | -- | -- | 0.154 | -- | 1.568 | 1373 | -- | -- |
| 31.24 | 0.26 | 9.82 | -- | 0.283 | -0.521 | -- | -- | 0.0853 | 16.7 | 7.751 | 2732 | -- | -- |
| 30.25 | 0.257 | 9.82 | 0.606 | -- | -- | -- | -- | 0.0657 | -- | -- | -- | -- | -- |
| 35.77 | 0.28 | 9.84 | -- | 0.272 | -- | -- | -- | 0.00439 | 15.4 | -- | -- | -- | -- |
| 33.71 | 0.27 | 9.82 | -- | -- | -0.536 | -- | -- | 0.0914 | -- | 7.951 | 8495 | -- | -- |
| 39.95 | 0.295 | 9.84 | -- | -- | -- | -- | -- | -0.00152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 21 |
| 2 | 19.47 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 3 | 19.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 6 | 19.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 12 | 19.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 17 | 19.55 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 14 |
| 53 | 19.60 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 54 | 19.61 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 55 | 19.61 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 66 | 19.63 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 97 | 19.66 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 106 | 19.67 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 13 |
| 115 | 19.68 | wind | 7 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 120 | 19.68 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 122 | 19.69 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 131 | 19.69 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 14 |
| 152 | 19.71 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 10 |
| 163 | 19.71 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 165 | 19.72 | wind | 5 | 43200 | > th | dose independent | sin | 4 | NA |
| 166 | 19.72 | wind | 9 | 43200 | < th | dose independent | sin | 14 | NA |
| 167 | 19.72 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 169 | 19.72 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 177 | 19.72 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 183 | 19.72 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 199 | 19.73 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 208 | 19.73 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 11 |
| 219 | 19.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 224 | 19.74 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 245 | 19.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 21 |
| 248 | 19.76 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 257 | 19.76 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 280 | 19.77 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 293 | 19.78 | wind | 3 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 302 | 19.78 | wind | 1 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 311 | 19.78 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 319 | 19.79 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 320 | 19.79 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 330 | 19.79 | wind | 7 | 43200 | > th | dose dependent | sin | 14 | NA |
| 340 | 19.79 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 14 |
| 347 | 19.80 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 10 |
| 365 | 19.81 | wind | 9 | 43200 | > th | dose independent | sin | 14 | NA |
| 382 | 19.81 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 12 |
| 389 | 19.81 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 392 | 19.82 | wind | 5 | 43200 | > th | dose independent | sin | 11 | NA |
| 395 | 19.82 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 398 | 19.82 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 408 | 19.82 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 434 | 19.83 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 435 | 19.83 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 443 | 19.83 | wind | 3 | 43200 | > th | dose dependent | sin | 5 | NA |
| 453 | 19.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 461 | 19.84 | wind | 5 | 43200 | < th | dose independent | sin | 11 | NA |
| 463 | 19.84 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 467 | 19.84 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 507 | 19.85 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 526 | 19.85 | humidity | 90 | 720 | < th | dose dependent | rect. | 16 | 12 |
| 536 | 19.86 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 541 | 19.86 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 8 |
| 570 | 19.87 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 11 |
| 616 | 19.88 | wind | 5 | 43200 | > th | dose dependent | sin | 12 | NA |
| 648 | 19.89 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 697 | 19.90 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 706 | 19.91 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 723 | 19.91 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 7 |
| 789 | 19.92 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 845 | 19.94 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 846 | 19.94 | wind | 3 | 43200 | > th | dose dependent | sin | 10 | NA |
| 878 | 19.95 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 888 | 19.95 | humidity | 80 | 1440 | < th | dose dependent | sin | 12 | NA |
| 944 | 19.96 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 949 | 19.97 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 965 | 19.97 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 21 |