Os12g0624900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GATA transcription factor 2 (AtGATA-2).
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Os12g0624900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GATA transcription factor 2 (AtGATA-2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.36 | 0.402 | 7.71 | 0.471 | 2.14 | -2.75 | -1.46 | -0.624 | -0.0642 | 10.1 | 2.344 | 660 | -- | -- |
| 73.56 | 0.399 | 7.72 | 0.464 | 2.12 | -2.89 | -1.54 | -- | -0.076 | 9.72 | 2.348 | 644 | -- | -- |
| 81.45 | 0.42 | 7.72 | 0.385 | 2.21 | -3.01 | -- | -0.736 | -0.0957 | 9.62 | 2.089 | 655 | -- | -- |
| 82.31 | 0.423 | 7.72 | 0.376 | 2.12 | -3.02 | -- | -- | -0.0925 | 9.44 | 2.068 | 632 | -- | -- |
| 91.78 | 0.446 | 7.74 | 0.391 | -- | -2.18 | -- | 0.834 | -0.0541 | -- | 2.3 | 243 | -- | -- |
| 98.44 | 0.465 | 7.72 | 0.591 | 2.66 | -- | -0.808 | -- | 0.0599 | 13.9 | -- | -- | -- | -- |
| 100.95 | 0.471 | 7.73 | 0.566 | 2.67 | -- | -- | -- | 0.0555 | 13.9 | -- | -- | -- | -- |
| 94.83 | 0.454 | 7.76 | 0.413 | -- | -2.21 | -- | -- | -0.0384 | -- | 2.65 | 246 | -- | -- |
| 85.58 | 0.431 | 7.72 | -- | 2.21 | -3.29 | -- | -- | -0.132 | 8.98 | 1.674 | 626 | -- | -- |
| 530.39 | 1.08 | 7.76 | 0.456 | -- | -- | -- | -- | -0.00589 | -- | -- | -- | -- | -- |
| 109.39 | 0.489 | 7.74 | -- | 2.66 | -- | -- | -- | -0.00749 | 13.9 | -- | -- | -- | -- |
| 99.3 | 0.464 | 7.77 | -- | -- | -2.22 | -- | -- | -0.0828 | -- | 2.503 | 250 | -- | -- |
| 535.88 | 1.08 | 7.77 | -- | -- | -- | -- | -- | -0.0565 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.90 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 12 |
| 4 | 62.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 6 | 62.32 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 8 | 62.44 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 2 |
| 16 | 64.06 | temperature | 25 | 30 | < th | dose independent | rect. | 16 | 14 |
| 21 | 64.49 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 27 | 65.07 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 43 | 65.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 53 | 65.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 57 | 66.35 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 20 |
| 61 | 66.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 64 | 66.70 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 2 |
| 79 | 67.23 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 124 | 67.69 | radiation | 1 | 720 | > th | dose independent | sin | 15 | NA |
| 126 | 67.72 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 128 | 67.78 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 4 |
| 170 | 68.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 172 | 68.79 | radiation | 1 | 720 | < th | dose dependent | sin | 21 | NA |
| 175 | 68.88 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 179 | 69.00 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 20 |
| 189 | 69.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 213 | 69.54 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 217 | 69.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 316 | 70.75 | radiation | 20 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 352 | 71.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 423 | 71.83 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 439 | 72.01 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 450 | 72.12 | temperature | 10 | 720 | > th | dose dependent | sin | 19 | NA |
| 483 | 72.37 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 9 |
| 487 | 72.38 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 20 |
| 536 | 72.65 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 550 | 72.77 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 19 |
| 565 | 72.87 | temperature | 30 | 90 | < th | dose dependent | sin | 9 | NA |
| 567 | 72.88 | temperature | 30 | 270 | < th | dose dependent | sin | 11 | NA |
| 699 | 73.62 | temperature | 10 | 270 | > th | dose dependent | sin | 14 | NA |
| 722 | 73.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 807 | 74.16 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 12 |
| 808 | 74.16 | temperature | 20 | 30 | > th | dose dependent | sin | 11 | NA |
| 812 | 74.18 | temperature | 25 | 90 | < th | dose independent | sin | 13 | NA |
| 849 | 74.29 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 889 | 74.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 939 | 74.59 | humidity | 50 | 270 | > th | dose independent | rect. | 15 | 13 |
| 983 | 74.74 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 1000 | 74.80 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |