Os01g0745700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GATA transcription factor 3 (AtGATA-3).
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Os01g0745700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GATA transcription factor 3 (AtGATA-3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 340.66 | 0.867 | 3.29 | -1.61 | 0.381 | -0.336 | -0.432 | 2.19 | -0.617 | 2.69 | 24.87 | 342 | -- | -- |
| 350.16 | 0.872 | 3.22 | -1.05 | 0.351 | -0.387 | -0.0405 | -- | -0.471 | 2.8 | 24.1 | 203 | -- | -- |
| 341.02 | 0.86 | 3.29 | -1.59 | 0.378 | -0.35 | -- | 2.13 | -0.63 | 2.98 | 24.87 | 374 | -- | -- |
| 348.93 | 0.87 | 3.23 | -0.976 | 0.361 | -0.304 | -- | -- | -0.418 | 1.74 | 24 | 201 | -- | -- |
| 348.12 | 0.869 | 3.27 | -1.51 | -- | -0.237 | -- | 2.04 | -0.542 | -- | 24.8 | 389 | -- | -- |
| 355.03 | 0.883 | 3.2 | -0.857 | 0.282 | -- | -0.184 | -- | -0.28 | 0.736 | -- | -- | -- | -- |
| 355.13 | 0.882 | 3.2 | -0.851 | 0.285 | -- | -- | -- | -0.28 | 1.13 | -- | -- | -- | -- |
| 355.42 | 0.878 | 3.22 | -0.947 | -- | -0.278 | -- | -- | -0.393 | -- | 24.1 | 475 | -- | -- |
| 372.5 | 0.899 | 3.2 | -- | 0.293 | -0.147 | -- | -- | -0.246 | 1.22 | 24.1 | 203 | -- | -- |
| 360.16 | 0.887 | 3.19 | -0.84 | -- | -- | -- | -- | -0.274 | -- | -- | -- | -- | -- |
| 374.21 | 0.905 | 3.18 | -- | 0.271 | -- | -- | -- | -0.185 | 1.01 | -- | -- | -- | -- |
| 377.73 | 0.905 | 3.18 | -- | -- | -0.124 | -- | -- | -0.228 | -- | 24.1 | 398 | -- | -- |
| 378.78 | 0.908 | 3.17 | -- | -- | -- | -- | -- | -0.181 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 331.93 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 19 |
| 7 | 334.28 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 11 |
| 10 | 334.95 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 15 | 335.19 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 16 | 7 |
| 21 | 335.60 | wind | 7.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 29 | 335.97 | wind | 9.0 | 30 | > th | dose independent | rect. | 17 | 3 |
| 52 | 336.56 | temperature | 25.0 | 270 | > th | dose independent | sin | 15 | NA |
| 56 | 336.69 | wind | 7.0 | 10 | > th | dose dependent | rect. | 17 | 4 |
| 117 | 337.10 | wind | 7.0 | 10 | > th | dose dependent | rect. | 17 | 17 |
| 139 | 337.45 | wind | 3.0 | 10 | < th | dose independent | rect. | 20 | 2 |
| 201 | 337.92 | wind | 9.0 | 10 | < th | dose independent | sin | 12 | NA |
| 206 | 338.01 | wind | 9.0 | 90 | > th | dose independent | rect. | 14 | 6 |
| 235 | 338.09 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 17 | 2 |
| 243 | 338.31 | temperature | 25.0 | 270 | < th | dose independent | sin | 14 | NA |
| 246 | 338.37 | wind | 9.0 | 90 | > th | dose dependent | rect. | 14 | 6 |
| 258 | 338.59 | wind | 9.0 | 90 | > th | dose independent | rect. | 14 | 20 |
| 269 | 338.71 | wind | 9.0 | 90 | > th | dose dependent | rect. | 14 | 20 |
| 278 | 338.73 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 16 | 7 |
| 317 | 338.98 | wind | 9.0 | 90 | > th | dose independent | rect. | 14 | 3 |
| 327 | 339.10 | temperature | 15.0 | 30 | > th | dose independent | rect. | 18 | 23 |
| 329 | 339.14 | wind | 9.0 | 90 | > th | dose dependent | rect. | 14 | 3 |
| 368 | 339.46 | wind | 9.0 | 10 | > th | dose independent | sin | 12 | NA |
| 379 | 339.51 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 397 | 339.57 | wind | 3.0 | 90 | < th | dose independent | rect. | 17 | 5 |
| 414 | 339.65 | humidity | 90.0 | 30 | < th | dose independent | rect. | 17 | 1 |
| 416 | 339.67 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 14 |
| 432 | 339.79 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 23 |
| 457 | 340.03 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 458 | 340.04 | temperature | 20.0 | 30 | > th | dose independent | rect. | 17 | 1 |
| 465 | 340.07 | temperature | 25.0 | 270 | < th | dose independent | rect. | 18 | 11 |
| 507 | 340.41 | wind | 3.0 | 270 | < th | dose independent | rect. | 18 | 1 |
| 524 | 340.49 | wind | 1.0 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 529 | 340.54 | radiation | 30.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 541 | 340.72 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 12 |
| 551 | 340.75 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 592 | 341.02 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 610 | 341.10 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 611 | 341.10 | wind | 5.0 | 90 | > th | dose dependent | rect. | 15 | 3 |
| 617 | 341.17 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 625 | 341.24 | radiation | 20.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 628 | 341.28 | temperature | 25.0 | 270 | < th | dose independent | rect. | 12 | 23 |
| 647 | 341.39 | temperature | 25.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 656 | 341.42 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 717 | 341.52 | wind | 9.0 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 739 | 341.64 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 8 |
| 750 | 341.70 | wind | 3.0 | 90 | < th | dose dependent | rect. | 16 | 6 |
| 759 | 341.78 | wind | 3.0 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 762 | 341.81 | temperature | 25.0 | 270 | < th | dose independent | no | NA | NA |
| 768 | 341.83 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 784 | 341.88 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 23 |
| 794 | 341.90 | wind | 5.0 | 10 | < th | dose dependent | rect. | 21 | 1 |
| 796 | 341.91 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 805 | 341.98 | temperature | 15.0 | 10 | > th | dose independent | rect. | 23 | 17 |
| 814 | 342.05 | temperature | 25.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 820 | 342.08 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 839 | 342.17 | wind | 9.0 | 90 | < th | dose independent | sin | 13 | NA |
| 843 | 342.18 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 851 | 342.23 | temperature | 25.0 | 270 | > th | dose independent | no | NA | NA |
| 870 | 342.24 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 879 | 342.25 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 884 | 342.26 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 888 | 342.27 | temperature | 25.0 | 270 | < th | dose independent | rect. | 9 | 20 |
| 935 | 342.41 | humidity | 50.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 939 | 342.43 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 940 | 342.43 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 953 | 342.47 | temperature | 25.0 | 270 | < th | dose independent | rect. | 22 | 23 |
| 957 | 342.49 | radiation | 20.0 | 720 | < th | dose independent | rect. | 6 | 12 |
| 962 | 342.51 | wind | 3.0 | 90 | < th | dose dependent | rect. | 19 | 3 |
| 978 | 342.57 | wind | 9.0 | 90 | > th | dose independent | sin | 14 | NA |