Os04g0539500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, GATA-type domain containing protein.
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Os04g0539500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, GATA-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.43 | 0.223 | 11.4 | 1.36 | 0.37 | -0.956 | -0.215 | 1.69 | 0.295 | 23.3 | 21.87 | 425 | -- | -- |
| 24.09 | 0.229 | 11.4 | 1.03 | 0.377 | -0.791 | -0.197 | -- | 0.191 | 23.9 | 21.4 | 455 | -- | -- |
| 22.62 | 0.222 | 11.4 | 1.36 | 0.374 | -0.952 | -- | 1.7 | 0.293 | 23.4 | 22.04 | 427 | -- | -- |
| 24.24 | 0.229 | 11.4 | 1.04 | 0.391 | -0.798 | -- | -- | 0.196 | 23.9 | 21.39 | 472 | -- | -- |
| 26.17 | 0.238 | 11.3 | 1.41 | -- | -1.06 | -- | 2.01 | 0.349 | -- | 21.42 | 139 | -- | -- |
| 35.88 | 0.281 | 11.4 | 0.853 | 0.481 | -- | -0.0468 | -- | 0.0628 | 2.63 | -- | -- | -- | -- |
| 35.89 | 0.281 | 11.4 | 0.854 | 0.481 | -- | -- | -- | 0.063 | 2.64 | -- | -- | -- | -- |
| 26.78 | 0.241 | 11.4 | 1.08 | -- | -0.988 | -- | -- | 0.237 | -- | 19.67 | 83 | -- | -- |
| 50.34 | 0.33 | 11.4 | -- | 0.391 | -0.489 | -- | -- | 0.0349 | 1.14 | 22.3 | 413 | -- | -- |
| 49.38 | 0.328 | 11.4 | 0.875 | -- | -- | -- | -- | 0.0752 | -- | -- | -- | -- | -- |
| 55.11 | 0.347 | 11.4 | -- | 0.497 | -- | -- | -- | -0.0321 | 2.67 | -- | -- | -- | -- |
| 55.57 | 0.347 | 11.4 | -- | -- | -0.753 | -- | -- | 0.0769 | -- | 21.25 | 24 | -- | -- |
| 69.56 | 0.389 | 11.4 | -- | -- | -- | -- | -- | -0.0219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.36 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 22 | 22.93 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 26 | 22.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 35 | 23.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 36 | 23.16 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 40 | 23.21 | temperature | 20 | 90 | > th | dose dependent | sin | 18 | NA |
| 51 | 23.28 | temperature | 20 | 270 | > th | dose dependent | sin | 20 | NA |
| 59 | 23.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 73 | 23.41 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 138 | 23.64 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 205 | 23.82 | temperature | 30 | 90 | < th | dose dependent | sin | 18 | NA |
| 235 | 23.87 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 236 | 23.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 293 | 23.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 11 |
| 358 | 23.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 388 | 24.03 | temperature | 30 | 270 | < th | dose dependent | sin | 20 | NA |
| 494 | 24.12 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 505 | 24.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 611 | 24.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 731 | 24.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 770 | 24.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 796 | 24.39 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 907 | 24.50 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 3 |