BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0539500 Os04g0539500|AK060574
(198 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G66320.1 | chr5:26496208-26497309 REVERSE LENGTH=340 139 8e-34
AT3G51080.1 | chr3:18973639-18974668 FORWARD LENGTH=313 137 3e-33
AT4G36240.1 | chr4:17147376-17148211 REVERSE LENGTH=239 128 2e-30
AT4G32890.1 | chr4:15875598-15876615 FORWARD LENGTH=309 126 6e-30
AT3G24050.1 | chr3:8686060-8687462 FORWARD LENGTH=275 125 1e-29
AT5G25830.1 | chr5:9004398-9005502 REVERSE LENGTH=332 125 1e-29
AT1G08010.1 | chr1:2486202-2487402 REVERSE LENGTH=304 122 8e-29
AT2G45050.1 | chr2:18582958-18583845 FORWARD LENGTH=265 122 9e-29
AT3G60530.1 | chr3:22373348-22374147 FORWARD LENGTH=241 122 1e-28
AT4G34680.1 | chr4:16553700-16554610 FORWARD LENGTH=270 120 3e-28
AT3G54810.2 | chr3:20296957-20298236 FORWARD LENGTH=323 119 1e-27
AT1G08000.1 | chr1:2483460-2484564 REVERSE LENGTH=309 116 6e-27
AT3G45170.1 | chr3:16537538-16538232 FORWARD LENGTH=205 112 1e-25
AT2G28340.1 | chr2:12103672-12106172 FORWARD LENGTH=292 102 1e-22
AT4G36620.1 | chr4:17268906-17269662 REVERSE LENGTH=212 53 1e-07
AT2G18380.1 | chr2:7982868-7984017 REVERSE LENGTH=209 53 1e-07
AT4G26150.1 | chr4:13253210-13254659 FORWARD LENGTH=353 52 2e-07
AT3G50870.1 | chr3:18911112-18912369 FORWARD LENGTH=296 52 2e-07
AT5G56860.1 | chr5:22989630-22991351 REVERSE LENGTH=399 52 3e-07
AT5G26930.1 | chr5:9479592-9480061 FORWARD LENGTH=121 51 3e-07
AT3G06740.1 | chr3:2126658-2127265 FORWARD LENGTH=150 51 3e-07
AT5G49300.1 | chr5:19984849-19985475 REVERSE LENGTH=140 51 3e-07
AT5G47140.1 | chr5:19145108-19147303 FORWARD LENGTH=471 50 1e-06
AT3G16870.1 | chr3:5763752-5764576 REVERSE LENGTH=191 48 3e-06
AT4G16141.1 | chr4:9131872-9132893 REVERSE LENGTH=198 48 3e-06
>AT5G66320.1 | chr5:26496208-26497309 REVERSE LENGTH=340
Length = 339
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/72 (87%), Positives = 66/72 (91%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
R+CSHCGVQKTPQWRAGP GAKTLCNACGVRYKSGRLLPEYRPACSPTF S +HSN HRK
Sbjct: 249 RKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRK 308
Query: 171 VLEMRRKKEVGS 182
V+EMRRKKE S
Sbjct: 309 VIEMRRKKEPTS 320
>AT3G51080.1 | chr3:18973639-18974668 FORWARD LENGTH=313
Length = 312
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 64/73 (87%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
R+C HCGVQKTPQWRAGP GAKTLCNACGVRYKSGRLLPEYRPACSPTF S +HSN H K
Sbjct: 221 RQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHSK 280
Query: 171 VLEMRRKKEVGSG 183
V+EMRRKKE G
Sbjct: 281 VIEMRRKKETSDG 293
>AT4G36240.1 | chr4:17147376-17148211 REVERSE LENGTH=239
Length = 238
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 60/66 (90%)
Query: 113 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRKVL 172
CSHCGVQKTPQWR GP GAKTLCNACGVR+KSGRLLPEYRPACSPTF + IHSNSHRKVL
Sbjct: 166 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFTNEIHSNSHRKVL 225
Query: 173 EMRRKK 178
E+R K
Sbjct: 226 ELRLMK 231
>AT4G32890.1 | chr4:15875598-15876615 FORWARD LENGTH=309
Length = 308
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 55/70 (78%), Positives = 61/70 (87%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
RRC HC +KTPQWR GP G KTLCNACGVRYKSGRL+PEYRPA SPTFV A HSNSHRK
Sbjct: 197 RRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVMARHSNSHRK 256
Query: 171 VLEMRRKKEV 180
V+E+RR+KE+
Sbjct: 257 VMELRRQKEM 266
>AT3G24050.1 | chr3:8686060-8687462 FORWARD LENGTH=275
Length = 274
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 63/73 (86%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
R+C HCG +KTPQWRAGP G KTLCNACGVRYKSGRL+PEYRPA SPTF + +HSNSHRK
Sbjct: 194 RKCQHCGAEKTPQWRAGPAGPKTLCNACGVRYKSGRLVPEYRPANSPTFTAELHSNSHRK 253
Query: 171 VLEMRRKKEVGSG 183
++EMR++ + G G
Sbjct: 254 IVEMRKQYQSGDG 266
>AT5G25830.1 | chr5:9004398-9005502 REVERSE LENGTH=332
Length = 331
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 55/71 (77%), Positives = 61/71 (85%)
Query: 110 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHR 169
+RRC HC KTPQWR GP G KTLCNACGVRYKSGRL+PEYRPA SPTFV A HSNSHR
Sbjct: 218 ERRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHR 277
Query: 170 KVLEMRRKKEV 180
KV+E+RR+KE+
Sbjct: 278 KVMELRRQKEM 288
>AT1G08010.1 | chr1:2486202-2487402 REVERSE LENGTH=304
Length = 303
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 50/69 (72%), Positives = 60/69 (86%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
R+C+HC KTPQWR GP G KTLCNACGVR++SGRL+PEYRPA SPTF+ A+HSNSHRK
Sbjct: 220 RKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPEYRPASSPTFIPAVHSNSHRK 279
Query: 171 VLEMRRKKE 179
++EMRRK +
Sbjct: 280 IIEMRRKDD 288
>AT2G45050.1 | chr2:18582958-18583845 FORWARD LENGTH=265
Length = 264
Score = 122 bits (307), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 61/70 (87%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
RRC+HC +KTPQWR GP G KTLCNACGVR+KSGRL+PEYRPA SPTFV HSNSHRK
Sbjct: 179 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPASSPTFVLTQHSNSHRK 238
Query: 171 VLEMRRKKEV 180
V+E+RR+KEV
Sbjct: 239 VMELRRQKEV 248
>AT3G60530.1 | chr3:22373348-22374147 FORWARD LENGTH=241
Length = 240
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/69 (78%), Positives = 60/69 (86%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
RRC+HC +KTPQWR GP G KTLCNACGVRYKSGRL+PEYRPA SPTFV HSNSHRK
Sbjct: 158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPASSPTFVLTQHSNSHRK 217
Query: 171 VLEMRRKKE 179
V+E+RR+KE
Sbjct: 218 VMELRRQKE 226
>AT4G34680.1 | chr4:16553700-16554610 FORWARD LENGTH=270
Length = 269
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 54/71 (76%), Positives = 59/71 (83%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
RRCSHCG TPQWR GP G KTLCNACGVR+KSGRL PEYRPA SPTF + IHSN HRK
Sbjct: 180 RRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHRK 239
Query: 171 VLEMRRKKEVG 181
VLE+R+ KE+G
Sbjct: 240 VLELRKSKELG 250
>AT3G54810.2 | chr3:20296957-20298236 FORWARD LENGTH=323
Length = 322
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 56/68 (82%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
R+C HC V KTPQWR GP G KTLCNACGVRYKSGRL PEYRPA SPTF A+HSNSH+K
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFTPALHSNSHKK 288
Query: 171 VLEMRRKK 178
V EMR K+
Sbjct: 289 VAEMRNKR 296
>AT1G08000.1 | chr1:2483460-2484564 REVERSE LENGTH=309
Length = 308
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 58/69 (84%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
R C+HC TPQWR GP G KTLCNACGVR+KSGRL+PEYRPA SPTF+ ++HSNSHRK
Sbjct: 218 RICTHCETITTPQWRQGPSGPKTLCNACGVRFKSGRLVPEYRPASSPTFIPSVHSNSHRK 277
Query: 171 VLEMRRKKE 179
++EMR+K +
Sbjct: 278 IIEMRKKDD 286
>AT3G45170.1 | chr3:16537538-16538232 FORWARD LENGTH=205
Length = 204
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 58/70 (82%)
Query: 110 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHR 169
D+ CSHCG +KTP WR GP GA TLCNACG+RY++GRLLPEYRPA SP F +HSN HR
Sbjct: 114 DKSCSHCGTRKTPLWREGPRGAGTLCNACGMRYRTGRLLPEYRPASSPDFKPNVHSNFHR 173
Query: 170 KVLEMRRKKE 179
KV+E+RR+++
Sbjct: 174 KVMEIRRERK 183
>AT2G28340.1 | chr2:12103672-12106172 FORWARD LENGTH=292
Length = 291
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 51/66 (77%)
Query: 113 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRKVL 172
C+HC TPQWR GP G KTLCNACG+R++SGRL+ EYRPA SPTF+ +HSN H+K++
Sbjct: 193 CTHCETTTTPQWREGPNGRKTLCNACGIRFRSGRLVLEYRPAASPTFIPTVHSNLHKKII 252
Query: 173 EMRRKK 178
MR K
Sbjct: 253 YMRMKD 258
>AT4G36620.1 | chr4:17268906-17269662 REVERSE LENGTH=212
Length = 211
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYK 143
RRC++C TP WR GP G K+LCNACG+R+K
Sbjct: 75 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFK 107
>AT2G18380.1 | chr2:7982868-7984017 REVERSE LENGTH=209
Length = 208
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYK 143
RRC+ C TP WR GP+G K+LCNACG+R+K
Sbjct: 92 RRCASCDTTSTPLWRNGPKGPKSLCNACGIRFK 124
>AT4G26150.1 | chr4:13253210-13254659 FORWARD LENGTH=353
Length = 352
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVR 141
R CS C KTP WR+GP G K+LCNACG+R
Sbjct: 199 RICSDCNTTKTPLWRSGPRGPKSLCNACGIR 229
>AT3G50870.1 | chr3:18911112-18912369 FORWARD LENGTH=296
Length = 295
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYK 143
RRC++C TP WR GP G K+LCNACG+R+K
Sbjct: 152 RRCANCDTTSTPLWRNGPRGPKSLCNACGIRFK 184
>AT5G56860.1 | chr5:22989630-22991351 REVERSE LENGTH=399
Length = 398
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 23/31 (74%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVR 141
R CS C KTP WR+GP G K+LCNACG+R
Sbjct: 230 RVCSDCNTTKTPLWRSGPRGPKSLCNACGIR 260
>AT5G26930.1 | chr5:9479592-9480061 FORWARD LENGTH=121
Length = 120
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 113 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGR 146
CS C KTP WR GP G K+LCNACG+R++ R
Sbjct: 28 CSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQR 61
>AT3G06740.1 | chr3:2126658-2127265 FORWARD LENGTH=150
Length = 149
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGR 146
+ C+ CG KTP WR GP G K+LCNACG+R + R
Sbjct: 41 KSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKR 76
>AT5G49300.1 | chr5:19984849-19985475 REVERSE LENGTH=140
Length = 139
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 113 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGR 146
C+ CG KTP WR GP G K+LCNACG+R + R
Sbjct: 38 CADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKR 71
>AT5G47140.1 | chr5:19145108-19147303 FORWARD LENGTH=471
Length = 470
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 24/41 (58%)
Query: 113 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRP 153
C HCGV TP WR GP LCNACG R+++ L Y P
Sbjct: 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGSLVNYTP 47
>AT3G16870.1 | chr3:5763752-5764576 REVERSE LENGTH=191
Length = 190
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGR 146
R C CG +TP WR GP G K+LCNACG++ + R
Sbjct: 42 RTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKR 77
>AT4G16141.1 | chr4:9131872-9132893 REVERSE LENGTH=198
Length = 197
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 113 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGR 146
C CG +TP WR GP G K+LCNACG++ + R
Sbjct: 39 CVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKR 72
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.132 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,932,809
Number of extensions: 63938
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 25
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)