BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0539500 Os04g0539500|AK060574
(198 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0539500 Zinc finger, GATA-type domain containing protein 171 4e-43
Os02g0645600 Similar to AG-motif binding protein-3 150 6e-37
Os01g0745700 Similar to GATA transcription factor 3 (AtGATA-3) 122 2e-28
Os05g0520300 Similar to GATA transcription factor 3 (AtGATA-3) 121 4e-28
Os10g0557600 Zinc finger, GATA-type domain containing protein 120 6e-28
Os12g0624900 Similar to GATA transcription factor 2 (AtGATA-2) 114 5e-26
Os03g0145200 Zinc finger, GATA-type domain containing protein 113 1e-25
Os11g0187200 107 4e-24
Os12g0168800 Similar to AG-motif binding protein-2 101 3e-22
Os10g0458800 99 2e-21
Os03g0130600 96 1e-20
>Os04g0539500 Zinc finger, GATA-type domain containing protein
Length = 198
Score = 171 bits (432), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/135 (63%), Positives = 86/135 (63%)
Query: 64 TITFCXXXXXXXXXXXXXXXXXXXXXXXXQLXXXXXXXXXXXXXXXDRRCSHCGVQKTPQ 123
TITFC QL DRRCSHCGVQKTPQ
Sbjct: 64 TITFCRRGKKSKHGKNGKNKPKKRGRKPKQLPPHPSGAAASAPAPGDRRCSHCGVQKTPQ 123
Query: 124 WRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRKVLEMRRKKEVGSG 183
WRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRKVLEMRRKKEVGSG
Sbjct: 124 WRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRKVLEMRRKKEVGSG 183
Query: 184 LLTXXXXXXXXXXSF 198
LLT SF
Sbjct: 184 LLTAAAAAAPAVASF 198
>Os02g0645600 Similar to AG-motif binding protein-3
Length = 387
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 68/71 (95%), Positives = 70/71 (98%)
Query: 110 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHR 169
DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVS++HSNSHR
Sbjct: 303 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSSLHSNSHR 362
Query: 170 KVLEMRRKKEV 180
KVLEMRRKKE
Sbjct: 363 KVLEMRRKKET 373
>Os01g0745700 Similar to GATA transcription factor 3 (AtGATA-3)
Length = 387
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 60/70 (85%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
RRC HC KTPQWR GP G KTLCNACGVRYKSGRL+PEYRPA SPTF+ + HSNSHRK
Sbjct: 262 RRCLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMVSKHSNSHRK 321
Query: 171 VLEMRRKKEV 180
VLE+RR+KE+
Sbjct: 322 VLELRRQKEM 331
>Os05g0520300 Similar to GATA transcription factor 3 (AtGATA-3)
Length = 386
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/70 (77%), Positives = 60/70 (85%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
RRC HC KTPQWR GP G KTLCNACGVRYKSGRL+PEYRPA SPTFV + HSNSHRK
Sbjct: 253 RRCLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVVSKHSNSHRK 312
Query: 171 VLEMRRKKEV 180
V+E+RR+KE+
Sbjct: 313 VVELRRQKEM 322
>Os10g0557600 Zinc finger, GATA-type domain containing protein
Length = 260
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 61/70 (87%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
RRC+HC +KTPQWR GP G KTLCNACGVR+KSGRL+PEYRPA SPTFV HSNSHRK
Sbjct: 149 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSNSHRK 208
Query: 171 VLEMRRKKEV 180
V+E+RR+KE+
Sbjct: 209 VMELRRQKEL 218
>Os12g0624900 Similar to GATA transcription factor 2 (AtGATA-2)
Length = 309
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 57/65 (87%)
Query: 111 RRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRK 170
+RC+HC KTPQWR GP G KTLCNACGVR+KSGRLLPEYRPA SPTFVS IHSNSH+K
Sbjct: 237 KRCTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPANSPTFVSDIHSNSHKK 296
Query: 171 VLEMR 175
V+++R
Sbjct: 297 VMQLR 301
>Os03g0145200 Zinc finger, GATA-type domain containing protein
Length = 219
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 113 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRKVL 172
C+HC V +TPQWR GP+G +TLCNACGVR+KSGRL PEYRPA SPTF +HSNSHR+V+
Sbjct: 124 CTHCAVDETPQWRLGPDGPRTLCNACGVRFKSGRLFPEYRPANSPTFSPLLHSNSHRRVM 183
Query: 173 EMRRKKE 179
EMR + E
Sbjct: 184 EMRLQSE 190
>Os11g0187200
Length = 431
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 47/69 (68%), Positives = 54/69 (78%)
Query: 110 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHR 169
DRRCSHCG +TPQWR GP+G TLCNACG+R K RLLPEYRP+ SP+F HSN HR
Sbjct: 360 DRRCSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDRLLPEYRPSTSPSFNGDEHSNRHR 419
Query: 170 KVLEMRRKK 178
KVL++R KK
Sbjct: 420 KVLKLREKK 428
>Os12g0168800 Similar to AG-motif binding protein-2
Length = 414
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 53/66 (80%)
Query: 113 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRKVL 172
C HCG +TPQWR GP G TLCNACGVRY+ GRLLPEYRP SPTF ++H+ +HR+VL
Sbjct: 279 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRLLPEYRPKGSPTFSPSVHAANHRQVL 338
Query: 173 EMRRKK 178
E+RR++
Sbjct: 339 ELRRQQ 344
>Os10g0458800
Length = 528
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%)
Query: 112 RCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHRKV 171
+C HCG +TPQWR GPEG +TLCNAC +RY+SG+L+PEYRP SPTF +HSN H +V
Sbjct: 64 QCRHCGTTETPQWRHGPEGHRTLCNACSMRYRSGKLVPEYRPLRSPTFSPELHSNRHHRV 123
Query: 172 LEMRRK 177
L++RR+
Sbjct: 124 LQLRRR 129
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 110 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHR 169
+RRC+HCG KTP W +GP+ LCNACG +Y+ GRL+PEYRP PTF +HSN+H
Sbjct: 452 ERRCTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRLVPEYRPLNCPTFSPELHSNAH- 510
Query: 170 KVLEMRRKKE 179
RR++E
Sbjct: 511 ---AHRRRRE 517
>Os03g0130600
Length = 271
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 110 DRRCSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRLLPEYRPACSPTFVSAIHSNSHR 169
++RC HC +TPQWR GP+G TLCNACG+RY+ LLPEYRP+ SP F S +SN HR
Sbjct: 185 EKRCGHCQTTETPQWRVGPDGPSTLCNACGIRYRIDHLLPEYRPSTSPGFGSDGYSNRHR 244
Query: 170 KVLEMRRKK 178
KV+++R KK
Sbjct: 245 KVVKLREKK 253
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.132 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,240,613
Number of extensions: 111506
Number of successful extensions: 325
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 12
Length of query: 198
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 102
Effective length of database: 12,023,257
Effective search space: 1226372214
Effective search space used: 1226372214
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)