BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0541700 Os12g0541700|AK103420
(127 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0541700 Similar to Rapid alkalinization factor 2 142 7e-35
Os01g0357900 Similar to RALF 88 2e-18
Os02g0670500 Rapid ALkalinization Factor family protein 87 2e-18
Os01g0257100 Rapid ALkalinization Factor family protein 86 5e-18
Os01g0358100 Rapid ALkalinization Factor family protein 82 6e-17
Os01g0932950 77 3e-15
Os10g0328900 76 7e-15
Os11g0456000 Similar to RALF 69 6e-13
Os12g0541900 Rapid ALkalinization Factor family protein 68 2e-12
>Os12g0541700 Similar to Rapid alkalinization factor 2
Length = 127
Score = 142 bits (357), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/99 (75%), Positives = 75/99 (75%)
Query: 29 GGGDRHLQLGMLSTGGECRGTXXXXXXXXXXXXXXXXXXXXXXXXHRRVLAGRGYISYQS 88
GGGDRHLQLGMLSTGGECRGT HRRVLAGRGYISYQS
Sbjct: 29 GGGDRHLQLGMLSTGGECRGTVGECLEGGDVDGEEGELGSASGEAHRRVLAGRGYISYQS 88
Query: 89 LRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
LRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG
Sbjct: 89 LRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
>Os01g0357900 Similar to RALF
Length = 117
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 45/53 (84%)
Query: 75 RRVLAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
RRVL G+GYISY +LRRD+ PCS RGASYYNCRPG ANPY RGCS ITRCRG
Sbjct: 65 RRVLQGQGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 117
>Os02g0670500 Rapid ALkalinization Factor family protein
Length = 119
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/53 (81%), Positives = 45/53 (84%)
Query: 75 RRVLAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
RRVL GRGYISY +LRRD+ PCS RGASYYNCRPG ANPY RGCS ITRCRG
Sbjct: 67 RRVLQGRGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 119
>Os01g0257100 Rapid ALkalinization Factor family protein
Length = 131
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/55 (76%), Positives = 46/55 (83%), Gaps = 1/55 (1%)
Query: 74 HRRVL-AGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
RRVL G GYI Y +LRRDSVPCS+RGASYYNC+PGA ANPY RGCS IT+CRG
Sbjct: 77 KRRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSAITQCRG 131
>Os01g0358100 Rapid ALkalinization Factor family protein
Length = 116
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 43/53 (81%)
Query: 75 RRVLAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
RRVL YISY +LRRD+ PCS RGASYYNC+PGA ANPY RGCS IT+CRG
Sbjct: 64 RRVLQQGSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSAITQCRG 116
>Os01g0932950
Length = 111
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 42/50 (84%)
Query: 78 LAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
L G GYISY ++RR++VPCS RGASYYNCRPG ANPY RGCS IT+CRG
Sbjct: 62 LQGGGYISYDAMRRNAVPCSYRGASYYNCRPGGQANPYTRGCSAITQCRG 111
>Os10g0328900
Length = 109
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 37/46 (80%)
Query: 82 GYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
GYISY +L D VPCS RGASYYNC PGA ANPY RGCS IT+CRG
Sbjct: 64 GYISYDALFADRVPCSLRGASYYNCHPGAEANPYTRGCSAITQCRG 109
>Os11g0456000 Similar to RALF
Length = 104
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 35/48 (72%)
Query: 80 GRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
GR YISY +LR D VPCSR+G YYNCR +ANPY RGC ITRCR
Sbjct: 54 GRRYISYDALRSDVVPCSRQGVPYYNCRIMTTANPYTRGCETITRCRD 101
>Os12g0541900 Rapid ALkalinization Factor family protein
Length = 132
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Query: 82 GYISY-QSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
GY+S+ ++RRDSVPC+R+GASYYNC PGA +PY+R C ITRC G
Sbjct: 86 GYLSFFAAMRRDSVPCTRKGASYYNCVPGAPPSPYNRSCEHITRCHG 132
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.140 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,256,973
Number of extensions: 93560
Number of successful extensions: 272
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 9
Length of query: 127
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 38
Effective length of database: 12,388,755
Effective search space: 470772690
Effective search space used: 470772690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 150 (62.4 bits)