Os01g0257100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rapid ALkalinization Factor family protein.
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Os01g0257100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rapid ALkalinization Factor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 412.35 | 0.954 | 11.3 | -3.98 | 3.09 | -4.81 | 4.41 | -2.82 | -0.859 | 7 | 47.76 | 949 | 9.96 | -- |
| 417.01 | 0.951 | 11.4 | -4.12 | 2.86 | -4.46 | 3.24 | -- | -0.892 | 7.19 | 36.96 | 1065 | 10.6 | -- |
| 441.25 | 0.978 | 11.3 | -4.09 | 2.79 | -4.46 | -- | 1.4 | -0.9 | 7.64 | 49.02 | 1038 | 10.2 | -- |
| 440.45 | 0.977 | 11.4 | -4.09 | 1.99 | -3.71 | -- | -- | -0.912 | 7.91 | 53 | 1083 | 11.7 | -- |
| 478.58 | 1.02 | 11.4 | -4.15 | -- | -3.44 | -- | 1.4 | -0.976 | -- | 37.19 | 1691 | 10.8 | -- |
| 608.81 | 1.16 | 11.4 | -4.08 | 1.37 | -- | 2.27 | -- | -0.864 | 9.7 | -- | -- | -- | -- |
| 627.69 | 1.17 | 11.4 | -3.99 | 1.35 | -- | -- | -- | -0.857 | 10 | -- | -- | -- | -- |
| 463.55 | 1 | 11.4 | -3.92 | -- | -3.53 | -- | -- | -0.959 | -- | 33.21 | 1677 | 10.7 | -- |
| 851.75 | 1.36 | 11.3 | -- | 2.47 | -3.85 | -- | -- | -0.661 | 8.59 | 68.97 | 975 | 9.9 | -- |
| 738.24 | 1.27 | 11.4 | -4.01 | -- | -- | -- | -- | -0.858 | -- | -- | -- | -- | -- |
| 1047.67 | 1.51 | 11.3 | -- | 1.37 | -- | -- | -- | -0.412 | 10.2 | -- | -- | -- | -- |
| 858.82 | 1.36 | 11.3 | -- | -- | -3.73 | -- | -- | -0.523 | -- | 16.05 | 1557 | 8.72 | -- |
| 1162.11 | 1.59 | 11.3 | -- | -- | -- | -- | -- | -0.413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 428.62 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 5 | 430.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 6 | 430.77 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 9 | 430.92 | humidity | 60 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 27 | 433.33 | humidity | 60 | 720 | > th | dose dependent | sin | 16 | NA |
| 28 | 433.49 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 36 | 434.28 | humidity | 80 | 1440 | > th | dose independent | sin | 23 | NA |
| 50 | 434.71 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 61 | 435.33 | humidity | 50 | 1440 | > th | dose dependent | sin | 19 | NA |
| 94 | 436.62 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 117 | 437.41 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 149 | 438.06 | humidity | 90 | 1440 | < th | dose dependent | sin | 18 | NA |
| 197 | 439.13 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 274 | 440.28 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 305 | 440.73 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 8 |
| 361 | 441.30 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 637 | 444.44 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 20 |
| 677 | 444.80 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 715 | 445.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 727 | 445.29 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 783 | 445.90 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 876 | 447.13 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 954 | 447.94 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 990 | 448.41 | humidity | 50 | 1440 | > th | dose dependent | rect. | 17 | 23 |