BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0257100 Os01g0257100|J100046K16
(131 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117 80 2e-16
AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120 79 8e-16
AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139 77 2e-15
AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121 77 2e-15
AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111 70 3e-13
AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114 67 2e-12
AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111 65 7e-12
AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119 63 6e-11
>AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117
Length = 116
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
Query: 77 KRRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSAITQCR 130
RR+L + YI Y ALRR++VPCS+RGASYYNC+ GA+ANPYSRGCSAIT+CR
Sbjct: 63 NRRIL-ATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115
>AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120
Length = 119
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 44/53 (83%), Gaps = 1/53 (1%)
Query: 78 RRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSAITQCR 130
RR+L YI Y A+RR+SVPCS+RGASYYNCQ GA+ANPYSRGCS IT+CR
Sbjct: 67 RRIL-AQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118
>AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139
Length = 138
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
Query: 77 KRRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSAITQCR 130
RR+L YI Y ALRR+++PCS+RGASYYNC+ GA+ANPYSRGCSAIT+CR
Sbjct: 84 NRRIL-ATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136
>AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121
Length = 120
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 44/54 (81%), Gaps = 1/54 (1%)
Query: 77 KRRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSAITQCR 130
RR+L + YI Y +L+R+SVPCS+RGASYYNCQ GA+ANPYSRGCS I +CR
Sbjct: 67 NRRIL-ATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCR 119
>AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111
Length = 110
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 39/52 (75%)
Query: 78 RRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSAITQC 129
RR L G YIGYDAL++++VPCS+RG SYY+C+ NPY RGCSAIT C
Sbjct: 54 RRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHC 105
>AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114
Length = 113
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Query: 78 RRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSAITQC 129
RRVL YIGY+ LRRD VPC + GASYY+C+ G +AN YSRGC IT+C
Sbjct: 54 RRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTITRC 104
>AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111
Length = 110
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 36/52 (69%)
Query: 78 RRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSAITQC 129
RR L YI Y ALR+++VPCS+RG SYY+C+ ANPY RGCS IT C
Sbjct: 54 RRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105
>AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119
Length = 118
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 78 RRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSAITQC 129
RRV+ YI Y+ LRRD VPC + GASYY C+ G +AN Y+RGCS IT+C
Sbjct: 59 RRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRC 109
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,315,668
Number of extensions: 35929
Number of successful extensions: 95
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 9
Length of query: 131
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 44
Effective length of database: 8,721,377
Effective search space: 383740588
Effective search space used: 383740588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)