FiT-DB / Search/ Help/ Sample detail

Os12g0541700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Rapid alkalinization factor 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.47 (0.0642) R2 : 0.733
β1 : -7.17 (0.237) R2dD : 0.56 R2D : 0.381
β2 : 2.84 (0.162) R2dC : 0.187 R2C : 0.133
β3 : -1.29 (0.839) R2dE : 0.000678 R2E : -0.0343
β4 : 1.07 (0.686) R2dD*C : 0.00154 R2D*C : -0.0368
β5 : 3.83 (2.15) R2dD*E : 0.000826 R2D*E : -0.0384
γ1 : -2.55 (0.137) R2dN8 : 0.183 R2N8 : -0.0057
σ : 1.11
deviance : 559.76
__
_____
C
peak time of C : 8.31
E
wheather : radiation
threshold : 2
memory length : 7
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
559.76 1.11 8.47 -7.17 2.84 -1.29 1.07 3.83 -2.55 8.31 2 7 15 2
634.53 1.17 8.43 -6.91 2.81 -1 0.99 -- -2.01 8.47 7.461 10 14.5 2.63
635.38 1.17 8.43 -6.85 2.83 -1.4 -- 3.67 -2.04 8.48 7.308 12 14.9 2.07
634.25 1.17 8.43 -6.92 2.71 -0.981 -- -- -2.03 8.57 13.08 17 14.8 2.82
629.13 1.17 8.44 -6.86 -- -2.28 -- -0.637 -1.89 -- 59.58 787 11.7 4.33
643.5 1.19 8.43 -6.9 2.87 -- 0.927 -- -2.06 8.35 -- -- -- --
646.18 1.19 8.43 -6.87 2.87 -- -- -- -2.06 8.37 -- -- -- --
629.03 1.17 8.47 -6.82 -- -2.28 -- -- -1.95 -- 59.47 783 11.7 4.52
1873.26 2.03 8.26 -- 2.7 -0.866 -- -- -1.27 8.83 30 17 14.8 3
1104.37 1.55 8.51 -6.86 -- -- -- -- -2.03 -- -- -- -- --
1890.96 2.03 8.26 -- 2.84 -- -- -- -1.29 8.54 -- -- -- --
1863.92 2.01 8.47 -- -- -2.34 -- -- -1.35 -- 59.99 787 11.7 4.55
2344.17 2.26 8.34 -- -- -- -- -- -1.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 559.76 radiation 10 1440 < th dose independent rect. 15 2
2 564.47 wind 1 14400 < th dose dependent rect. 22 6
6 568.46 wind 1 14400 < th dose dependent rect. 24 4
7 568.83 radiation 10 1440 < th dose independent rect. 15 13
14 569.00 radiation 10 1440 < th dose independent rect. 15 10
21 570.92 atmosphere 995 43200 < th dose dependent rect. 12 18
36 571.79 atmosphere 995 43200 < th dose dependent sin 15 NA
38 571.93 radiation 20 1440 < th dose dependent rect. 11 1
40 572.23 radiation 10 1440 < th dose independent rect. 11 7
43 572.66 wind 1 14400 < th dose dependent rect. 1 1
44 572.75 atmosphere 995 43200 > th dose independent rect. 18 17
49 573.10 atmosphere 995 43200 < th dose dependent rect. 15 18
52 573.23 radiation 10 1440 < th dose independent sin 16 NA
53 573.31 radiation 10 1440 < th dose independent rect. 11 17
59 573.41 radiation 10 1440 < th dose independent rect. 11 12
60 573.41 radiation 10 1440 < th dose independent rect. 11 14
67 573.75 atmosphere 995 43200 < th dose independent rect. 18 16
90 575.04 atmosphere 995 43200 > th dose independent sin 9 NA
95 575.29 wind 1 14400 > th dose independent rect. 1 1
98 575.55 radiation 20 1440 < th dose independent rect. 11 1
99 575.69 atmosphere 995 43200 < th dose independent sin 9 NA
122 576.66 atmosphere 995 43200 < th dose independent rect. 17 19
127 576.99 atmosphere 995 43200 < th dose dependent sin 11 NA
150 577.97 temperature 20 1440 > th dose independent rect. 24 1
153 578.09 temperature 20 1440 > th dose independent rect. 24 3
155 578.13 temperature 20 1440 < th dose independent rect. 23 4
161 578.23 temperature 20 1440 < th dose independent rect. 1 1
173 578.51 humidity 70 1440 > th dose independent rect. 11 2
177 578.69 wind 1 14400 < th dose independent rect. 24 2
186 579.01 humidity 70 1440 < th dose independent rect. 11 2
192 579.32 atmosphere 995 43200 > th dose independent rect. 20 14
197 579.49 atmosphere 995 43200 > th dose independent rect. 20 19
200 579.52 atmosphere 995 43200 < th dose independent rect. 21 13
222 579.90 atmosphere 995 43200 < th dose independent rect. 21 18
225 579.91 wind 1 14400 < th dose independent rect. 22 4
230 580.06 temperature 30 4320 > th dose independent rect. 14 1
237 580.29 temperature 30 4320 < th dose independent rect. 14 1
260 580.99 radiation 20 4320 > th dose dependent rect. 16 16
297 581.79 atmosphere 995 43200 < th dose dependent rect. 21 12
306 582.06 radiation 1 1440 > th dose dependent rect. 11 1
307 582.09 atmosphere 995 43200 > th dose independent rect. 4 4
335 582.66 atmosphere 995 43200 > th dose independent rect. 1 8
347 582.82 atmosphere 995 43200 < th dose independent rect. 1 8
352 582.84 atmosphere 995 43200 < th dose dependent rect. 3 5
408 583.25 atmosphere 995 43200 < th dose independent rect. 4 4
431 583.54 atmosphere 995 43200 < th dose dependent rect. 18 5
512 584.92 radiation 40 43200 > th dose independent rect. 13 2
513 584.99 humidity 70 1440 < th dose independent rect. 11 21
525 585.22 radiation 20 1440 < th dose independent rect. 13 23
531 585.31 radiation 20 43200 > th dose independent rect. 13 1
541 585.48 humidity 70 1440 < th dose independent rect. 17 21
550 585.65 atmosphere 995 43200 > th dose independent rect. 20 3
553 585.68 atmosphere 995 43200 > th dose independent rect. 22 1
559 585.73 radiation 1 1440 > th dose dependent rect. 15 2
561 585.74 humidity 70 1440 < th dose independent rect. 11 9
580 585.83 radiation 20 1440 < th dose independent rect. 15 23
583 585.85 humidity 60 1440 > th dose independent rect. 14 1
585 585.87 radiation 30 1440 < th dose dependent rect. 10 8
591 585.92 radiation 30 1440 < th dose dependent rect. 9 19
594 585.93 radiation 30 1440 < th dose dependent rect. 9 11
613 586.00 radiation 30 1440 < th dose dependent rect. 9 16
630 586.05 atmosphere 995 43200 < th dose independent rect. 21 1
642 586.05 atmosphere 995 43200 < th dose dependent rect. 21 1
655 586.05 radiation 1 1440 > th dose dependent rect. 15 15
664 586.09 radiation 40 43200 > th dose independent rect. 13 19
694 586.15 humidity 60 1440 < th dose independent rect. 14 1
696 586.16 radiation 30 1440 < th dose dependent sin 19 NA
725 586.33 atmosphere 995 43200 < th dose dependent rect. 17 8
730 586.35 radiation 30 1440 < th dose dependent rect. 15 2
733 586.36 radiation 20 1440 < th dose independent rect. 2 16
735 586.36 radiation 20 1440 < th dose independent rect. 24 18
791 586.45 radiation 20 1440 < th dose independent no NA NA
801 586.46 radiation 20 1440 > th dose independent rect. 11 1
834 586.51 humidity 70 1440 < th dose dependent rect. 15 1
845 586.55 wind 1 43200 < th dose dependent rect. 4 3
849 586.58 humidity 60 1440 > th dose independent rect. 14 3
855 586.61 radiation 1 1440 > th dose dependent rect. 15 4
867 586.62 humidity 80 1440 < th dose dependent rect. 11 2
898 586.75 temperature 30 4320 < th dose independent rect. 14 10
906 586.77 temperature 30 4320 < th dose independent rect. 14 12
909 586.78 temperature 30 4320 < th dose independent rect. 14 8
929 586.84 wind 1 14400 < th dose dependent rect. 14 1
944 586.90 wind 9 43200 < th dose independent rect. 16 2
954 586.96 humidity 80 1440 < th dose dependent rect. 19 22
959 586.98 temperature 20 4320 > th dose independent rect. 21 1
964 587.00 temperature 30 4320 < th dose independent rect. 14 16
985 587.07 radiation 1 1440 > th dose dependent sin 18 NA
988 587.08 temperature 30 4320 < th dose independent rect. 14 18
992 587.09 radiation 1 1440 > th dose dependent rect. 10 9