BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0541700 Os12g0541700|AK103420
(127 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121 88 1e-18
AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117 84 2e-17
AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139 84 2e-17
AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120 83 3e-17
AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111 65 9e-12
AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119 64 1e-11
AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114 64 3e-11
AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111 61 1e-10
>AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121
Length = 120
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 46/53 (86%)
Query: 74 HRRVLAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCR 126
+RR+LA YISYQSL+R+SVPCSRRGASYYNC+ GA ANPY RGCS+I RCR
Sbjct: 67 NRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCR 119
>AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117
Length = 116
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 45/53 (84%)
Query: 74 HRRVLAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCR 126
+RR+LA YISY +LRR++VPCSRRGASYYNCR GA ANPY RGCS ITRCR
Sbjct: 63 NRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115
>AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139
Length = 138
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 46/53 (86%)
Query: 74 HRRVLAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCR 126
+RR+LA R YISY +LRR+++PCSRRGASYYNCR GA ANPY RGCS ITRCR
Sbjct: 84 NRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136
>AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120
Length = 119
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 45/52 (86%)
Query: 75 RRVLAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCR 126
RR+LA + YISY ++RR+SVPCSRRGASYYNC+ GA ANPY RGCS ITRCR
Sbjct: 67 RRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118
>AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111
Length = 110
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 75 RRVLAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRC 125
R++ A R YISY +LR+++VPCSRRG SYY+C+ ANPY RGCS IT C
Sbjct: 55 RQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105
>AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119
Length = 118
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Query: 75 RRVLAGRG-YISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRC 125
RRV+ R YISY++LRRD VPC + GASYY CR G AN Y+RGCS ITRC
Sbjct: 59 RRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRC 109
>AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114
Length = 113
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 75 RRVLAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRC 125
R ++A + YI Y++LRRD VPC + GASYY+CR G AN Y RGC ITRC
Sbjct: 55 RVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDTITRC 104
>AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111
Length = 110
Score = 60.8 bits (146), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 74 HRRVLA-GRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRC 125
+RR LA GR YI Y +L++++VPCSRRG SYY+C+ NPY RGCS IT C
Sbjct: 53 NRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHC 105
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.140 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,756,728
Number of extensions: 44063
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 9
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 105 (45.1 bits)