Os11g0456000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RALF.
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Os11g0456000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RALF.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 418.36 | 0.961 | 5.49 | -5.44 | 4 | -2.03 | -8.09 | 5.01 | -1.95 | 10.8 | 25.11 | 274 | 21.9 | 22.4 |
| 487.81 | 1.03 | 5.48 | -4.26 | 3.9 | -1.98 | -7.46 | -- | -1.74 | 10.8 | 25.19 | 286 | 22.1 | 22.2 |
| 611.73 | 1.15 | 5.51 | -5.93 | 3.46 | -1.57 | -- | 5.14 | -1.93 | 11.1 | 24.9 | 164 | 22.2 | 24 |
| 668.05 | 1.2 | 5.4 | -4.56 | 3.56 | -1.35 | -- | -- | -1.53 | 11.7 | 24.01 | 201 | 22.1 | 24 |
| 1236.53 | 1.65 | 5.66 | -5.92 | -- | -2.11 | -- | 4.61 | -2.34 | -- | 24.9 | 164 | 22.2 | 24 |
| 601.08 | 1.15 | 5.23 | -3.8 | 3.74 | -- | -6.89 | -- | -0.825 | 12.1 | -- | -- | -- | -- |
| 806.73 | 1.33 | 5.25 | -4.07 | 3.77 | -- | -- | -- | -0.858 | 12 | -- | -- | -- | -- |
| 1301.29 | 1.68 | 5.43 | -4.55 | -- | -1.87 | -- | -- | -1.47 | -- | 25.8 | 8 | 23.9 | 24 |
| 1210.47 | 1.62 | 5.22 | -- | 3.6 | -0.785 | -- | -- | -0.741 | 11.6 | 25.14 | 173 | 22.2 | 24 |
| 1700.6 | 1.93 | 5.33 | -4.19 | -- | -- | -- | -- | -0.911 | -- | -- | -- | -- | -- |
| 1243.86 | 1.65 | 5.15 | -- | 3.82 | -- | -- | -- | -0.404 | 12.1 | -- | -- | -- | -- |
| 1856.76 | 2.01 | 5.33 | -- | -- | -1.71 | -- | -- | -0.907 | -- | 25.88 | 4 | 23.7 | 24 |
| 2163.88 | 2.17 | 5.22 | -- | -- | -- | -- | -- | -0.446 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 426.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 3 | 429.88 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 22 |
| 4 | 431.09 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 22 |
| 12 | 436.77 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 20 |
| 22 | 439.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 28 | 439.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 43 | 442.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 46 | 442.41 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 23 |
| 48 | 442.58 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 56 | 443.48 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 57 | 443.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 59 | 443.96 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 62 | 444.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 67 | 445.70 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 75 | 446.40 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 76 | 446.43 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 18 |
| 83 | 447.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 92 | 447.93 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 94 | 448.09 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 95 | 448.10 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 99 | 448.54 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 100 | 448.54 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 23 |
| 112 | 449.10 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 114 | 449.15 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 121 | 449.44 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 131 | 449.82 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 135 | 450.31 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 23 |
| 147 | 450.94 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 151 | 451.04 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 153 | 451.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 155 | 451.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 168 | 451.73 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 184 | 452.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 6 |
| 190 | 452.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 198 | 452.85 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 217 | 453.22 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 10 |
| 225 | 453.39 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 235 | 453.47 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 9 |
| 236 | 453.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 13 |
| 260 | 453.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 11 |
| 262 | 453.72 | temperature | 20 | 1440 | > th | dose dependent | sin | 0 | NA |
| 322 | 454.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 329 | 454.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 334 | 454.50 | wind | 7 | 43200 | > th | dose independent | sin | 16 | NA |
| 336 | 454.52 | wind | 7 | 43200 | < th | dose independent | sin | 16 | NA |
| 360 | 454.73 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 414 | 455.12 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 455 | 455.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 467 | 455.46 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 23 |
| 491 | 455.60 | wind | 5 | 43200 | > th | dose dependent | sin | 17 | NA |
| 518 | 455.73 | temperature | 25 | 1440 | > th | dose independent | sin | 20 | NA |
| 655 | 456.49 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 666 | 456.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 671 | 456.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 675 | 456.61 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 733 | 457.05 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 756 | 457.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 759 | 457.27 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 779 | 457.43 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 793 | 457.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 795 | 457.51 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 23 |
| 814 | 457.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 816 | 457.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 860 | 457.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 908 | 458.15 | temperature | 25 | 1440 | < th | dose independent | sin | 20 | NA |