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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0358100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Rapid ALkalinization Factor family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.64 (0.0526) R2 : 0.361
β1 : -1.99 (0.195) R2dD : 0.157 R2D : 0.0804
β2 : 1.52 (0.15) R2dC : 0.187 R2C : -0.0438
β3 : 1.59 (0.121) R2dE : 0.321 R2E : 0.0226
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.362 (0.114) R2dN8 : 0.0199 R2N8 : -0.024
σ : 0.981
deviance : 443.41
__
_____
C
peak time of C : 8.32
E
wheather : temperature
threshold : 19.51
memory length : 272
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.2
open length of G : 15.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
441.46 0.987 4.65 -1.99 1.48 1.51 -1.02 -0.332 -0.383 8.11 19.7 273 14.1 16
441.57 0.979 4.65 -1.97 1.51 1.54 -0.819 -- -0.375 8.25 19.5 272 14.2 15.9
443.86 0.981 4.64 -1.93 1.46 1.5 -- 0.0659 -0.373 8.05 19.7 262 14.2 16.1
443.41 0.981 4.64 -1.99 1.52 1.59 -- -- -0.362 8.32 19.51 272 14.2 15.9
482.57 1.02 4.63 -1.98 -- 1.17 -- -0.577 -0.201 -- 20.57 139 20.2 12.7
521.96 1.07 4.61 -1.59 1.41 -- 0.44 -- -0.117 4.28 -- -- -- --
522.44 1.07 4.61 -1.6 1.42 -- -- -- -0.119 4.35 -- -- -- --
470.4 1.01 4.69 -1.75 -- 1.6 -- -- -0.345 -- 20.56 310 21.5 9.33
540.26 1.08 4.6 -- 1.37 1.19 -- -- -0.127 7.32 20.3 317 13.2 16.9
630.75 1.17 4.62 -1.54 -- -- -- -- -0.0814 -- -- -- -- --
589.69 1.14 4.57 -- 1.39 -- -- -- 0.0589 4.38 -- -- -- --
550.27 1.09 4.64 -- -- 1.38 -- -- -0.144 -- 20.56 258 21.9 9.58
693.41 1.23 4.58 -- -- -- -- -- 0.0896 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 443.18 temperature 20 270 > th dose independent rect. 14 16
7 449.53 wind 1 1440 > th dose independent rect. 23 2
9 451.11 temperature 20 30 > th dose independent rect. 16 17
14 453.88 temperature 20 270 > th dose independent rect. 24 8
31 456.76 radiation 40 14400 < th dose independent rect. 15 1
37 457.35 radiation 40 14400 < th dose independent rect. 15 13
53 459.34 wind 1 720 < th dose independent rect. 23 2
58 459.69 wind 1 43200 < th dose dependent rect. 2 1
66 460.74 wind 5 270 < th dose independent rect. 21 16
77 461.91 radiation 20 4320 < th dose independent rect. 17 7
81 462.29 temperature 20 720 < th dose independent rect. 21 3
100 463.49 temperature 20 270 < th dose independent rect. 20 12
115 464.22 radiation 1 720 > th dose dependent rect. 18 11
124 464.65 temperature 20 90 > th dose independent rect. 3 6
133 465.35 radiation 10 14400 < th dose independent rect. 18 10
140 465.83 radiation 10 4320 < th dose dependent rect. 24 5
144 465.87 temperature 20 270 < th dose independent rect. 14 18
146 465.95 temperature 20 270 > th dose independent sin 10 NA
163 466.68 wind 7 43200 > th dose dependent rect. 1 2
166 466.78 wind 7 43200 > th dose independent rect. 2 1
168 466.90 temperature 10 43200 > th dose independent rect. 4 1
172 467.04 wind 7 43200 < th dose independent rect. 2 1
176 467.21 humidity 50 43200 > th dose independent rect. 4 4
178 467.30 humidity 80 14400 > th dose dependent rect. 22 1
183 467.53 wind 9 14400 < th dose independent rect. 6 4
189 467.76 temperature 10 43200 < th dose independent rect. 4 1
191 467.79 temperature 10 43200 < th dose dependent rect. 4 1
201 468.14 wind 7 43200 < th dose independent rect. 7 2
205 468.18 temperature 20 270 < th dose independent sin 11 NA
214 468.30 temperature 10 270 > th dose dependent rect. 14 16
223 468.52 temperature 20 720 > th dose independent rect. 18 6
246 468.85 wind 7 43200 > th dose independent rect. 7 2
269 468.95 radiation 1 720 > th dose dependent rect. 18 1
283 469.04 humidity 90 14400 < th dose independent rect. 22 3
307 469.13 temperature 20 720 > th dose independent rect. 20 4
309 469.16 wind 5 270 < th dose independent rect. 6 8
313 469.18 humidity 90 14400 < th dose independent rect. 5 1
314 469.18 humidity 70 14400 > th dose independent rect. 21 7
351 469.44 wind 9 43200 > th dose independent rect. 22 6
354 469.47 radiation 1 1440 < th dose independent rect. 14 1
355 469.47 radiation 1 1440 < th dose dependent rect. 14 1
389 469.77 humidity 90 14400 < th dose independent rect. 21 10
401 469.84 atmosphere 1005 14400 > th dose independent rect. 23 1
404 469.84 temperature 10 43200 < th dose dependent sin 2 NA
406 469.86 wind 7 43200 > th dose dependent rect. 18 16
462 470.09 temperature 10 43200 > th dose independent rect. 2 17
494 470.25 wind 9 270 < th dose dependent rect. 6 8
501 470.34 radiation 1 1440 < th dose independent rect. 11 1
503 470.34 radiation 1 1440 < th dose dependent rect. 11 1
516 470.45 temperature 10 43200 > th dose independent rect. 10 6
526 470.49 radiation 1 1440 > th dose independent rect. 14 1
528 470.49 radiation 10 4320 > th dose dependent rect. 17 1
565 470.58 atmosphere 1005 14400 < th dose independent rect. 23 1
568 470.59 wind 7 43200 > th dose dependent rect. 21 12
571 470.60 humidity 80 270 > th dose dependent rect. 24 7
581 470.65 temperature 20 270 > th dose independent rect. 24 21
583 470.66 wind 1 43200 < th dose independent rect. 2 1
585 470.68 wind 7 43200 < th dose independent rect. 1 8
593 470.72 radiation 1 1440 > th dose independent rect. 10 5
605 470.78 wind 9 43200 < th dose independent rect. 18 16
609 470.80 wind 7 43200 > th dose dependent rect. 20 14
623 470.92 humidity 80 43200 > th dose dependent rect. 6 3
667 471.14 wind 9 43200 < th dose independent rect. 16 18
675 471.17 humidity 80 43200 > th dose dependent rect. 7 1
679 471.19 temperature 20 270 > th dose independent rect. 1 18
716 471.27 wind 7 43200 > th dose independent rect. 1 8
717 471.28 temperature 10 43200 < th dose independent sin 3 NA
720 471.29 humidity 90 14400 < th dose independent rect. 22 1
736 471.42 wind 9 43200 < th dose independent sin 10 NA
751 471.48 wind 7 43200 > th dose dependent sin 9 NA
758 471.57 wind 9 43200 > th dose dependent rect. 15 18
765 471.61 temperature 10 43200 > th dose independent rect. 16 4
774 471.62 wind 7 43200 < th dose independent rect. 22 11
784 471.69 wind 9 43200 > th dose independent sin 10 NA
793 471.75 wind 7 43200 < th dose independent rect. 4 5
796 471.76 temperature 10 43200 > th dose independent sin 5 NA
822 471.81 wind 9 43200 > th dose dependent rect. 21 7
835 471.89 wind 7 43200 > th dose independent rect. 22 11
840 471.90 temperature 10 43200 > th dose independent rect. 16 14
853 471.95 radiation 1 1440 > th dose independent rect. 12 3
863 471.97 wind 5 43200 > th dose dependent rect. 1 9
883 472.04 radiation 30 14400 < th dose dependent rect. 24 5
908 472.15 wind 5 43200 > th dose dependent rect. 6 4
915 472.19 wind 9 43200 > th dose independent rect. 18 15
955 472.30 humidity 50 43200 < th dose independent rect. 3 6
963 472.30 humidity 60 90 > th dose dependent rect. 3 6
995 472.36 wind 9 43200 > th dose independent rect. 15 19