BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0358100 Os01g0358100|AK105209
(116 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0358100 Rapid ALkalinization Factor family protein 176 3e-45
Os01g0357900 Similar to RALF 116 4e-27
Os02g0670500 Rapid ALkalinization Factor family protein 99 5e-22
Os01g0257100 Rapid ALkalinization Factor family protein 97 2e-21
Os12g0541700 Similar to Rapid alkalinization factor 2 85 1e-17
Os01g0932950 83 5e-17
Os10g0328900 82 8e-17
Os12g0541900 Rapid ALkalinization Factor family protein 62 6e-11
Os11g0456000 Similar to RALF 62 8e-11
>Os01g0358100 Rapid ALkalinization Factor family protein
Length = 116
Score = 176 bits (446), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 32 EVPLSWELGVVGADDAFGFPGEEAADSATAVVRRVLQQGSYISYGALRRDTTPCSVRGAS 91
EVPLSWELGVVGADDAFGFPGEEAADSATAVVRRVLQQGSYISYGALRRDTTPCSVRGAS
Sbjct: 32 EVPLSWELGVVGADDAFGFPGEEAADSATAVVRRVLQQGSYISYGALRRDTTPCSVRGAS 91
Query: 92 YYNCQPGAEANPYSRGCSAITQCRG 116
YYNCQPGAEANPYSRGCSAITQCRG
Sbjct: 92 YYNCQPGAEANPYSRGCSAITQCRG 116
>Os01g0357900 Similar to RALF
Length = 117
Score = 116 bits (290), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 73/90 (81%), Gaps = 5/90 (5%)
Query: 32 EVPLSWELGVVGA-----DDAFGFPGEEAADSATAVVRRVLQQGSYISYGALRRDTTPCS 86
EVPL+WELGV G +D+FGF E+AA AVVRRVLQ YISYGALRRDTTPCS
Sbjct: 28 EVPLAWELGVGGGGGGGEEDSFGFSSEDAAADGAAVVRRVLQGQGYISYGALRRDTTPCS 87
Query: 87 VRGASYYNCQPGAEANPYSRGCSAITQCRG 116
VRGASYYNC+PG +ANPYSRGCSAIT+CRG
Sbjct: 88 VRGASYYNCRPGGQANPYSRGCSAITRCRG 117
>Os02g0670500 Rapid ALkalinization Factor family protein
Length = 119
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 63/88 (71%), Gaps = 3/88 (3%)
Query: 32 EVPLSWELGVVGADDAFGFPGEEAADSATAVV---RRVLQQGSYISYGALRRDTTPCSVR 88
EVPL WELGV + G + +A RRVLQ YISYGALRRDTTPCSVR
Sbjct: 32 EVPLGWELGVGVGGGSGDDDGFGFSGAAADGAAVVRRVLQGRGYISYGALRRDTTPCSVR 91
Query: 89 GASYYNCQPGAEANPYSRGCSAITQCRG 116
GASYYNC+PG +ANPYSRGCSAIT+CRG
Sbjct: 92 GASYYNCRPGGQANPYSRGCSAITRCRG 119
>Os01g0257100 Rapid ALkalinization Factor family protein
Length = 131
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/66 (75%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 52 GEEAADSATAVVRRVLQQGS-YISYGALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSA 110
GE+ +A RRVLQ GS YI Y ALRRD+ PCS RGASYYNCQPGAEANPYSRGCSA
Sbjct: 66 GEDELAAAATGKRRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSA 125
Query: 111 ITQCRG 116
ITQCRG
Sbjct: 126 ITQCRG 131
>Os12g0541700 Similar to Rapid alkalinization factor 2
Length = 127
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 46 DAFGFPGEEAADSATAVVRRVLQQGSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYS 105
D G GE + S A RRVL YISY +LRRD+ PCS RGASYYNC+PGA ANPY
Sbjct: 58 DVDGEEGELGSASGEAH-RRVLAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYH 116
Query: 106 RGCSAITQCRG 116
RGCS IT+CRG
Sbjct: 117 RGCSRITRCRG 127
>Os01g0932950
Length = 111
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/50 (76%), Positives = 43/50 (86%)
Query: 67 LQQGSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSAITQCRG 116
LQ G YISY A+RR+ PCS RGASYYNC+PG +ANPY+RGCSAITQCRG
Sbjct: 62 LQGGGYISYDAMRRNAVPCSYRGASYYNCRPGGQANPYTRGCSAITQCRG 111
>Os10g0328900
Length = 109
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 48/81 (59%), Gaps = 20/81 (24%)
Query: 56 ADSATAVVRRVLQQGS--------------------YISYGALRRDTTPCSVRGASYYNC 95
AD V+RRVL + YISY AL D PCS+RGASYYNC
Sbjct: 29 ADDGVTVMRRVLDTAAPAPAPGPAPGGAMANTTTSGYISYDALFADRVPCSLRGASYYNC 88
Query: 96 QPGAEANPYSRGCSAITQCRG 116
PGAEANPY+RGCSAITQCRG
Sbjct: 89 HPGAEANPYTRGCSAITQCRG 109
>Os12g0541900 Rapid ALkalinization Factor family protein
Length = 132
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 67 LQQGSYISY-GALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSAITQCRG 116
+ + Y+S+ A+RRD+ PC+ +GASYYNC PGA +PY+R C IT+C G
Sbjct: 82 IDKNGYLSFFAAMRRDSVPCTRKGASYYNCVPGAPPSPYNRSCEHITRCHG 132
>Os11g0456000 Similar to RALF
Length = 104
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 31/44 (70%)
Query: 72 YISYGALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSAITQCR 115
YISY ALR D PCS +G YYNC+ ANPY+RGC IT+CR
Sbjct: 57 YISYDALRSDVVPCSRQGVPYYNCRIMTTANPYTRGCETITRCR 100
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,228,223
Number of extensions: 107996
Number of successful extensions: 284
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 9
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)