Os12g0541900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rapid ALkalinization Factor family protein.
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Os12g0541900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rapid ALkalinization Factor family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.48 | 0.496 | 6.14 | -0.655 | 0.333 | 0.78 | 0.162 | 0.114 | -0.571 | 10.3 | 40.55 | 714 | -- | -- |
| 111.48 | 0.492 | 6.14 | -0.66 | 0.333 | 0.784 | 0.165 | -- | -0.574 | 10.3 | 40.67 | 713 | -- | -- |
| 111.56 | 0.492 | 6.14 | -0.649 | 0.334 | 0.781 | -- | 0.0881 | -0.574 | 10.3 | 40.67 | 713 | -- | -- |
| 111.57 | 0.492 | 6.14 | -0.656 | 0.333 | 0.783 | -- | -- | -0.576 | 10.3 | 40.68 | 713 | -- | -- |
| 116.09 | 0.502 | 6.14 | -0.605 | -- | 0.706 | -- | 0.345 | -0.53 | -- | 43.08 | 622 | -- | -- |
| 125.84 | 0.526 | 6.12 | -0.562 | 0.447 | -- | 0.341 | -- | -0.429 | 15.4 | -- | -- | -- | -- |
| 126.2 | 0.526 | 6.12 | -0.556 | 0.448 | -- | -- | -- | -0.427 | 15.4 | -- | -- | -- | -- |
| 115.86 | 0.501 | 6.14 | -0.599 | -- | 0.74 | -- | -- | -0.524 | -- | 45.76 | 626 | -- | -- |
| 121.07 | 0.512 | 6.12 | -- | 0.319 | 0.732 | -- | -- | -0.473 | 10.3 | 39.95 | 679 | -- | -- |
| 137.5 | 0.548 | 6.12 | -0.575 | -- | -- | -- | -- | -0.438 | -- | -- | -- | -- | -- |
| 134.35 | 0.542 | 6.11 | -- | 0.459 | -- | -- | -- | -0.365 | 15.4 | -- | -- | -- | -- |
| 124.97 | 0.521 | 6.12 | -- | -- | 0.768 | -- | -- | -0.432 | -- | 48.4 | 628 | -- | -- |
| 146.22 | 0.564 | 6.11 | -- | -- | -- | -- | -- | -0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.32 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 105.41 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 14 |
| 4 | 105.98 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 5 | 106.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 7 | 106.05 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 8 | 106.05 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 3 |
| 12 | 106.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 13 | 106.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 14 | 106.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 15 | 106.16 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 25 | 106.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 26 | 106.35 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 11 |
| 27 | 106.39 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 31 | 106.42 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 44 | 106.71 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 55 | 106.99 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 76 | 107.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 79 | 107.12 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 82 | 107.15 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 83 | 107.15 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 85 | 107.23 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 86 | 107.23 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 97 | 107.37 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 98 | 107.37 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 4 |
| 99 | 107.37 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 100 | 107.39 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 101 | 107.40 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 102 | 107.41 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 103 | 107.41 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 11 |
| 104 | 107.41 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 11 |
| 108 | 107.48 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 112 | 107.51 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 114 | 107.51 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 123 | 107.60 | wind | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 133 | 107.65 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 141 | 107.68 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 158 | 107.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 172 | 107.80 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 173 | 107.82 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 175 | 107.82 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 207 | 107.99 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 225 | 108.08 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 270 | 108.32 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 283 | 108.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 285 | 108.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 287 | 108.37 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 291 | 108.38 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 299 | 108.42 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 313 | 108.50 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 336 | 108.53 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 364 | 108.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 365 | 108.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 9 |
| 372 | 108.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 387 | 108.66 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 4 | NA |
| 399 | 108.68 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 414 | 108.73 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 19 |
| 415 | 108.73 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 19 |
| 416 | 108.75 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 6 |
| 419 | 108.76 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 420 | 108.78 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 19 |
| 454 | 108.92 | wind | 1.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 460 | 108.94 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 4 |
| 462 | 108.95 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 490 | 109.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 17 |
| 504 | 109.05 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 542 | 109.16 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 546 | 109.17 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 564 | 109.24 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 579 | 109.28 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 638 | 109.47 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 655 | 109.51 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 665 | 109.54 | wind | 1.0 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 672 | 109.55 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 688 | 109.60 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 705 | 109.66 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 722 | 109.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 743 | 109.76 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 20 |
| 746 | 109.77 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 762 | 109.83 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 765 | 109.84 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 770 | 109.85 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 772 | 109.85 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 791 | 109.91 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 792 | 109.91 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 799 | 109.92 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 804 | 109.92 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 14 |
| 808 | 109.94 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 810 | 109.94 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 812 | 109.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 823 | 109.97 | wind | 1.0 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 857 | 110.08 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 864 | 110.09 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 893 | 110.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 11 |