Os01g0357900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RALF.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0357900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to RALF.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.46 | 0.549 | 9.59 | -1.83 | 1.54 | 2.09 | -0.246 | -4.08 | -0.442 | 6.71 | 26.6 | 1221 | -- | -- |
| 148.14 | 0.567 | 9.49 | -0.986 | 1.87 | 1.91 | 0.145 | -- | -0.396 | 6.35 | 26 | 2045 | -- | -- |
| 136.55 | 0.544 | 9.59 | -1.82 | 1.55 | 2.11 | -- | -4.08 | -0.429 | 6.72 | 26.66 | 1202 | -- | -- |
| 140.42 | 0.552 | 9.49 | -0.988 | 1.6 | 1.75 | -- | -- | -0.193 | 6.75 | 27 | 1170 | -- | -- |
| 255.08 | 0.744 | 9.61 | -1.82 | -- | 2.04 | -- | -3.88 | -0.405 | -- | 26.63 | 1306 | -- | -- |
| 249.47 | 0.74 | 9.47 | -0.394 | 1.58 | -- | 0.272 | -- | -0.211 | 5.93 | -- | -- | -- | -- |
| 249.64 | 0.74 | 9.47 | -0.392 | 1.58 | -- | -- | -- | -0.212 | 5.96 | -- | -- | -- | -- |
| 256.8 | 0.746 | 9.51 | -0.885 | -- | 1.66 | -- | -- | -0.224 | -- | 26.6 | 1300 | -- | -- |
| 159.21 | 0.588 | 9.46 | -- | 1.51 | 1.6 | -- | -- | -0.149 | 6.61 | 26.98 | 1166 | -- | -- |
| 378.95 | 0.91 | 9.5 | -0.345 | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
| 253.69 | 0.745 | 9.46 | -- | 1.57 | -- | -- | -- | -0.168 | 5.97 | -- | -- | -- | -- |
| 275.6 | 0.773 | 9.47 | -- | -- | 1.48 | -- | -- | -0.0397 | -- | 27.6 | 1286 | -- | -- |
| 382.09 | 0.912 | 9.49 | -- | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 145.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 5 | 146.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 17 | 146.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 10 |
| 26 | 146.37 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 93 | 147.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 121 | 147.32 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 140 | 147.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 141 | 147.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 160 | 147.58 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 206 | 148.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 250 | 148.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 258 | 148.97 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 14 |
| 266 | 149.08 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 273 | 149.14 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 297 | 149.67 | wind | 3 | 43200 | > th | dose dependent | sin | 3 | NA |
| 299 | 149.72 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 308 | 149.89 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 321 | 150.10 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 326 | 150.30 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 328 | 150.32 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 331 | 150.39 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 346 | 150.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 355 | 150.46 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 363 | 150.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 376 | 150.66 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 384 | 150.77 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 14 |
| 385 | 150.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 399 | 150.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 400 | 150.80 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 20 |
| 424 | 151.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 428 | 151.10 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 431 | 151.11 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 445 | 151.18 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 456 | 151.23 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 473 | 151.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 476 | 151.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 483 | 151.52 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 507 | 151.56 | temperature | 30 | 1440 | < th | dose independent | sin | 20 | NA |
| 508 | 151.56 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 521 | 151.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 623 | 151.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 22 |
| 646 | 151.78 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 700 | 151.87 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 718 | 151.96 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 775 | 152.13 | temperature | 30 | 1440 | > th | dose independent | sin | 19 | NA |
| 793 | 152.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 798 | 152.18 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 832 | 152.26 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 911 | 152.26 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 954 | 152.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 962 | 152.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 23 |