BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0357900 Os01g0357900|AK067878
(117 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117 85 1e-17
AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139 83 3e-17
AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120 79 5e-16
AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121 72 5e-14
AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111 64 2e-11
AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119 62 8e-11
AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114 60 2e-10
AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111 60 3e-10
AT5G67070.1 | chr5:26768120-26768509 FORWARD LENGTH=130 49 5e-07
>AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117
Length = 116
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/49 (81%), Positives = 41/49 (83%)
Query: 68 LQGQGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCR 116
L YISYGALRR+T PCS RGASYYNCR G QANPYSRGCSAITRCR
Sbjct: 67 LATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115
>AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139
Length = 138
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/49 (81%), Positives = 42/49 (85%)
Query: 68 LQGQGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCR 116
L + YISYGALRR+T PCS RGASYYNCR G QANPYSRGCSAITRCR
Sbjct: 88 LATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136
>AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120
Length = 119
Score = 79.0 bits (193), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 41/49 (83%)
Query: 68 LQGQGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCR 116
L + YISYGA+RR++ PCS RGASYYNC+ G QANPYSRGCS ITRCR
Sbjct: 70 LAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118
>AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121
Length = 120
Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 38/49 (77%)
Query: 68 LQGQGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCR 116
L YISY +L+R++ PCS RGASYYNC+ G QANPYSRGCS I RCR
Sbjct: 71 LATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCR 119
>AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111
Length = 110
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 34/45 (75%)
Query: 71 QGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRC 115
+ YISYGALR++ PCS RG SYY+C+ +ANPY RGCS IT C
Sbjct: 61 RSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105
>AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119
Length = 118
Score = 61.6 bits (148), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 68 LQGQGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRC 115
+ + YISY LRRD PC GASYY CR GQAN Y+RGCS ITRC
Sbjct: 63 MMRKQYISYETLRRDMVPCQKPGASYYACR-SGQANAYNRGCSVITRC 109
>AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114
Length = 113
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 73 YISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRC 115
YI Y LRRD PC GASYY+CR GQAN YSRGC ITRC
Sbjct: 63 YIGYETLRRDMVPCQKPGASYYDCR-SGQANSYSRGCDTITRC 104
>AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111
Length = 110
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 69 QGQGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRC 115
+G+ YI Y AL+++ PCS RG SYY+C+ + NPY RGCSAIT C
Sbjct: 59 RGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHC 105
>AT5G67070.1 | chr5:26768120-26768509 FORWARD LENGTH=130
Length = 129
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 73 YISYGALRRDTTPCSVR-GASYY--NC-RPGGQANPYSRGCSAITRCR 116
YISYGAL + PC R G SYY NC R G +PYSRGCS+ITRCR
Sbjct: 81 YISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCR 128
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,482,352
Number of extensions: 35797
Number of successful extensions: 95
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 9
Length of query: 117
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 32
Effective length of database: 8,776,209
Effective search space: 280838688
Effective search space used: 280838688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)