BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0357900 Os01g0357900|AK067878
(117 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0357900 Similar to RALF 110 2e-25
Os02g0670500 Rapid ALkalinization Factor family protein 109 4e-25
Os01g0358100 Rapid ALkalinization Factor family protein 97 2e-21
Os01g0932950 86 5e-18
Os01g0257100 Rapid ALkalinization Factor family protein 83 3e-17
Os12g0541700 Similar to Rapid alkalinization factor 2 83 4e-17
Os10g0328900 78 1e-15
Os11g0456000 Similar to RALF 66 6e-12
Os12g0541900 Rapid ALkalinization Factor family protein 63 4e-11
>Os01g0357900 Similar to RALF
Length = 117
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 60/90 (66%)
Query: 28 EVPLAWELGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGQGYISYGALRRDTTPCS 87
EVPLAWELGV LQGQGYISYGALRRDTTPCS
Sbjct: 28 EVPLAWELGVGGGGGGGEEDSFGFSSEDAAADGAAVVRRVLQGQGYISYGALRRDTTPCS 87
Query: 88 VRGASYYNCRPGGQANPYSRGCSAITRCRG 117
VRGASYYNCRPGGQANPYSRGCSAITRCRG
Sbjct: 88 VRGASYYNCRPGGQANPYSRGCSAITRCRG 117
>Os02g0670500 Rapid ALkalinization Factor family protein
Length = 119
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 28 EVPLAWELGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGQGYISYGALRRDTTPCS 87
EVPL WELGV LQG+GYISYGALRRDTTPCS
Sbjct: 32 EVPLGWELGVGVGGGSGDDDGFGFSGAAADGAAVVRRV--LQGRGYISYGALRRDTTPCS 89
Query: 88 VRGASYYNCRPGGQANPYSRGCSAITRCRG 117
VRGASYYNCRPGGQANPYSRGCSAITRCRG
Sbjct: 90 VRGASYYNCRPGGQANPYSRGCSAITRCRG 119
>Os01g0358100 Rapid ALkalinization Factor family protein
Length = 116
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 28 EVPLAWELGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQGQGYISYGALRRDTTPCS 87
EVPL+WELGV LQ YISYGALRRDTTPCS
Sbjct: 32 EVPLSWELGVVGADDAFGFPGEEAADSATAVVRRV-----LQQGSYISYGALRRDTTPCS 86
Query: 88 VRGASYYNCRPGGQANPYSRGCSAITRCRG 117
VRGASYYNC+PG +ANPYSRGCSAIT+CRG
Sbjct: 87 VRGASYYNCQPGAEANPYSRGCSAITQCRG 116
>Os01g0932950
Length = 111
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 41/50 (82%), Positives = 45/50 (90%)
Query: 68 LQGQGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 117
LQG GYISY A+RR+ PCS RGASYYNCRPGGQANPY+RGCSAIT+CRG
Sbjct: 62 LQGGGYISYDAMRRNAVPCSYRGASYYNCRPGGQANPYTRGCSAITQCRG 111
>Os01g0257100 Rapid ALkalinization Factor family protein
Length = 131
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 42/48 (87%)
Query: 70 GQGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 117
G GYI Y ALRRD+ PCS RGASYYNC+PG +ANPYSRGCSAIT+CRG
Sbjct: 84 GSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSAITQCRG 131
>Os12g0541700 Similar to Rapid alkalinization factor 2
Length = 127
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 42/50 (84%)
Query: 68 LQGQGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 117
L G+GYISY +LRRD+ PCS RGASYYNCRPG ANPY RGCS ITRCRG
Sbjct: 78 LAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
>Os10g0328900
Length = 109
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 39/47 (82%)
Query: 71 QGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 117
GYISY AL D PCS+RGASYYNC PG +ANPY+RGCSAIT+CRG
Sbjct: 63 SGYISYDALFADRVPCSLRGASYYNCHPGAEANPYTRGCSAITQCRG 109
>Os11g0456000 Similar to RALF
Length = 104
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 33/49 (67%)
Query: 69 QGQGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 117
G+ YISY ALR D PCS +G YYNCR ANPY+RGC ITRCR
Sbjct: 53 NGRRYISYDALRSDVVPCSRQGVPYYNCRIMTTANPYTRGCETITRCRD 101
>Os12g0541900 Rapid ALkalinization Factor family protein
Length = 132
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 68 LQGQGYISY-GALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 117
+ GY+S+ A+RRD+ PC+ +GASYYNC PG +PY+R C ITRC G
Sbjct: 82 IDKNGYLSFFAAMRRDSVPCTRKGASYYNCVPGAPPSPYNRSCEHITRCHG 132
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,562,029
Number of extensions: 68249
Number of successful extensions: 141
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 9
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)