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Os02g0670500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Rapid ALkalinization Factor family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0265) R2 : 0.721
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.36 (0.0693) R2dC : 0.714 R2C : 0.703
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.269 (0.0557) R2dN8 : 0.0184 R2N8 : 0.00659
σ : 0.499
deviance : 113.81
__
_____
C
peak time of C : 5.62
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.81 0.457 12.2 -0.66 2.13 0.516 0.96 -0.81 -0.327 6.44 8.592 226 -- --
97.88 0.461 12.2 -0.652 2.12 0.534 0.886 -- -0.318 6.46 8.579 236 -- --
97.01 0.459 12.2 -0.65 2.14 0.521 -- -0.77 -0.327 6.45 8.65 215 -- --
99.69 0.465 12.2 -0.628 2.12 0.509 -- -- -0.326 6.39 8.58 237 -- --
118.74 0.508 12.2 -0.415 -- 2.58 -- -0.0979 -0.3 -- 0.2508 668 -- --
103.19 0.476 12.2 -0.614 2.37 -- 0.562 -- -0.334 5.64 -- -- -- --
103.95 0.477 12.2 -0.612 2.37 -- -- -- -0.337 5.61 -- -- -- --
117.31 0.504 12.2 -0.414 -- 2.64 -- -- -0.269 -- 0.1918 676 -- --
109.76 0.488 12.1 -- 2.22 0.404 -- -- -0.238 6 21.05 191 -- --
396.42 0.93 12.2 -0.535 -- -- -- -- -0.28 -- -- -- -- --
113.81 0.499 12.2 -- 2.36 -- -- -- -0.269 5.62 -- -- -- --
119.83 0.51 12.2 -- -- 2.73 -- -- -0.202 -- 0.03 679 -- --
403.97 0.938 12.2 -- -- -- -- -- -0.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.49 temperature 20.0 270 > th dose independent rect. 21 5
2 86.41 temperature 10.0 270 > th dose dependent rect. 21 17
3 86.62 temperature 15.0 270 > th dose independent rect. 21 17
5 86.82 wind 7.0 270 < th dose independent rect. 7 9
6 86.84 temperature 20.0 90 > th dose independent rect. 23 17
7 86.85 humidity 90.0 270 < th dose independent rect. 7 9
9 87.10 atmosphere 1000.0 270 > th dose independent rect. 21 17
12 87.17 wind 7.0 270 < th dose independent rect. 21 17
15 87.33 temperature 20.0 10 > th dose independent rect. 23 17
25 87.52 wind 9.0 270 < th dose dependent rect. 7 8
37 87.92 temperature 15.0 270 > th dose independent rect. 7 9
48 88.27 precipitation 0.1 270 < th dose independent rect. 16 15
49 88.27 precipitation 0.1 270 < th dose dependent rect. 16 15
50 88.32 precipitation 0.1 270 < th dose independent rect. 14 7
51 88.32 precipitation 0.1 270 < th dose dependent rect. 14 7
58 88.38 humidity 70.0 270 > th dose dependent rect. 21 5
61 88.44 humidity 50.0 270 > th dose independent rect. 21 17
64 88.48 temperature 20.0 270 > th dose independent rect. 23 1
65 88.50 temperature 10.0 270 > th dose dependent rect. 7 8
66 88.53 temperature 10.0 270 > th dose independent rect. 14 7
71 88.56 wind 1.0 270 > th dose independent rect. 14 7
74 88.57 precipitation 0.1 270 < th dose independent rect. 21 17
77 88.57 precipitation 0.1 270 < th dose dependent rect. 21 17
78 88.60 radiation 40.0 270 < th dose independent rect. 14 7
89 88.77 wind 1.0 270 > th dose independent rect. 15 16
91 88.79 wind 9.0 270 < th dose independent rect. 14 7
92 88.80 temperature 10.0 10 > th dose dependent rect. 23 17
94 88.81 humidity 80.0 90 > th dose dependent rect. 23 4
97 88.90 humidity 50.0 270 > th dose independent rect. 14 7
104 88.96 atmosphere 1015.0 270 < th dose independent rect. 14 7
117 89.09 atmosphere 995.0 270 > th dose independent rect. 7 9
123 89.14 temperature 20.0 270 > th dose independent rect. 9 17
141 89.26 temperature 20.0 10 > th dose independent rect. 23 5
156 89.36 precipitation 0.1 270 < th dose independent rect. 7 9
157 89.36 precipitation 0.1 270 < th dose dependent rect. 7 9
162 89.39 atmosphere 995.0 270 > th dose dependent rect. 14 7
170 89.44 atmosphere 1000.0 270 > th dose independent rect. 21 5
175 89.48 atmosphere 1015.0 270 < th dose independent rect. 7 9
176 89.48 temperature 10.0 270 > th dose independent rect. 16 15
177 89.48 radiation 30.0 270 < th dose independent rect. 16 15
182 89.52 atmosphere 1015.0 270 < th dose independent rect. 21 17
186 89.56 atmosphere 995.0 270 > th dose independent rect. 14 7
196 89.59 wind 9.0 270 < th dose independent rect. 16 15
208 89.63 radiation 30.0 270 < th dose dependent rect. 16 17
219 89.73 radiation 40.0 270 < th dose dependent rect. 16 15
222 89.76 radiation 40.0 270 < th dose independent rect. 2 9
238 89.85 humidity 50.0 270 > th dose independent rect. 16 15
260 89.95 humidity 50.0 270 > th dose dependent rect. 2 9
261 89.95 wind 9.0 270 < th dose dependent rect. 21 17
286 90.02 temperature 20.0 90 > th dose independent rect. 8 20
293 90.05 radiation 1.0 270 > th dose independent rect. 7 8
309 90.11 atmosphere 1005.0 270 > th dose independent rect. 15 16
331 90.19 temperature 10.0 270 > th dose dependent rect. 21 5
367 90.34 wind 1.0 90 > th dose independent sin 18 NA
454 90.58 radiation 10.0 270 < th dose dependent rect. 2 19
464 90.60 radiation 40.0 270 < th dose dependent rect. 2 9
482 90.64 atmosphere 1000.0 10 > th dose dependent rect. 16 17
484 90.65 humidity 80.0 270 > th dose independent rect. 21 5
489 90.67 humidity 50.0 270 > th dose independent rect. 7 8
497 90.68 temperature 20.0 10 > th dose independent rect. 8 21
501 90.69 atmosphere 995.0 270 > th dose independent rect. 16 15
558 90.80 temperature 30.0 270 < th dose independent rect. 21 17
560 90.80 precipitation 0.1 270 < th dose independent rect. 2 19
563 90.80 precipitation 0.1 270 < th dose dependent rect. 2 19
566 90.81 radiation 40.0 90 < th dose dependent rect. 15 8
591 90.87 wind 1.0 90 < th dose independent rect. 23 3
619 90.92 temperature 10.0 10 > th dose dependent rect. 9 7
652 90.99 humidity 90.0 30 < th dose independent rect. 16 15
655 91.00 atmosphere 1010.0 10 < th dose independent rect. 9 7
674 91.03 atmosphere 1000.0 10 > th dose independent rect. 23 17
765 91.21 humidity 80.0 90 > th dose dependent rect. 12 15
801 91.28 wind 1.0 90 > th dose independent rect. 8 9
821 91.30 atmosphere 1005.0 10 > th dose independent rect. 18 15
822 91.30 atmosphere 1000.0 10 > th dose independent rect. 12 16
827 91.31 atmosphere 1005.0 10 > th dose independent rect. 16 17
839 91.32 humidity 60.0 720 > th dose dependent rect. 15 11
842 91.33 temperature 30.0 270 < th dose independent rect. 14 7
861 91.36 wind 7.0 270 < th dose independent rect. 11 15
892 91.42 wind 3.0 90 < th dose dependent rect. 23 4
937 91.49 radiation 10.0 270 < th dose independent rect. 2 20
960 91.52 temperature 15.0 270 > th dose dependent rect. 22 3