BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0670500 Os02g0670500|J100066I03
(119 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0670500 Rapid ALkalinization Factor family protein 112 4e-26
Os01g0357900 Similar to RALF 112 7e-26
Os01g0358100 Rapid ALkalinization Factor family protein 99 5e-22
Os12g0541700 Similar to Rapid alkalinization factor 2 89 1e-18
Os01g0257100 Rapid ALkalinization Factor family protein 87 2e-18
Os01g0932950 85 1e-17
Os10g0328900 78 2e-15
Os11g0456000 Similar to RALF 67 4e-12
Os12g0541900 Rapid ALkalinization Factor family protein 62 8e-11
>Os02g0670500 Rapid ALkalinization Factor family protein
Length = 119
Score = 112 bits (281), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 61/88 (69%)
Query: 32 EVPLGWELXXXXXXXXXXXXXXXXXXXXXXXXXXXRRVLQGRGYISYGALRRDTTPCSVR 91
EVPLGWEL RRVLQGRGYISYGALRRDTTPCSVR
Sbjct: 32 EVPLGWELGVGVGGGSGDDDGFGFSGAAADGAAVVRRVLQGRGYISYGALRRDTTPCSVR 91
Query: 92 GASYYNCRPGGQANPYSRGCSAITRCRG 119
GASYYNCRPGGQANPYSRGCSAITRCRG
Sbjct: 92 GASYYNCRPGGQANPYSRGCSAITRCRG 119
>Os01g0357900 Similar to RALF
Length = 117
Score = 112 bits (280), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Query: 32 EVPLGWELXXXXXXXXXXXXXX--XXXXXXXXXXXXXRRVLQGRGYISYGALRRDTTPCS 89
EVPL WEL RRVLQG+GYISYGALRRDTTPCS
Sbjct: 28 EVPLAWELGVGGGGGGGEEDSFGFSSEDAAADGAAVVRRVLQGQGYISYGALRRDTTPCS 87
Query: 90 VRGASYYNCRPGGQANPYSRGCSAITRCRG 119
VRGASYYNCRPGGQANPYSRGCSAITRCRG
Sbjct: 88 VRGASYYNCRPGGQANPYSRGCSAITRCRG 117
>Os01g0358100 Rapid ALkalinization Factor family protein
Length = 116
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 32 EVPLGWELXXXXXXXXXXXXXXXXXXXXXXXXXXXRRVLQGRGYISYGALRRDTTPCSVR 91
EVPL WEL RRVLQ YISYGALRRDTTPCSVR
Sbjct: 32 EVPLSWELGVVGADDAFGFPGEEAADSATAVV---RRVLQQGSYISYGALRRDTTPCSVR 88
Query: 92 GASYYNCRPGGQANPYSRGCSAITRCRG 119
GASYYNC+PG +ANPYSRGCSAIT+CRG
Sbjct: 89 GASYYNCQPGAEANPYSRGCSAITQCRG 116
>Os12g0541700 Similar to Rapid alkalinization factor 2
Length = 127
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/53 (81%), Positives = 45/53 (84%)
Query: 67 RRVLQGRGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 119
RRVL GRGYISY +LRRD+ PCS RGASYYNCRPG ANPY RGCS ITRCRG
Sbjct: 75 RRVLAGRGYISYQSLRRDSVPCSRRGASYYNCRPGASANPYHRGCSRITRCRG 127
>Os01g0257100 Rapid ALkalinization Factor family protein
Length = 131
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 47/54 (87%), Gaps = 1/54 (1%)
Query: 67 RRVLQG-RGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 119
RRVLQG GYI Y ALRRD+ PCS RGASYYNC+PG +ANPYSRGCSAIT+CRG
Sbjct: 78 RRVLQGGSGYIGYDALRRDSVPCSQRGASYYNCQPGAEANPYSRGCSAITQCRG 131
>Os01g0932950
Length = 111
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/50 (82%), Positives = 45/50 (90%)
Query: 70 LQGRGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 119
LQG GYISY A+RR+ PCS RGASYYNCRPGGQANPY+RGCSAIT+CRG
Sbjct: 62 LQGGGYISYDAMRRNAVPCSYRGASYYNCRPGGQANPYTRGCSAITQCRG 111
>Os10g0328900
Length = 109
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/46 (76%), Positives = 39/46 (84%)
Query: 74 GYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 119
GYISY AL D PCS+RGASYYNC PG +ANPY+RGCSAIT+CRG
Sbjct: 64 GYISYDALFADRVPCSLRGASYYNCHPGAEANPYTRGCSAITQCRG 109
>Os11g0456000 Similar to RALF
Length = 104
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 33/49 (67%)
Query: 71 QGRGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 119
GR YISY ALR D PCS +G YYNCR ANPY+RGC ITRCR
Sbjct: 53 NGRRYISYDALRSDVVPCSRQGVPYYNCRIMTTANPYTRGCETITRCRD 101
>Os12g0541900 Rapid ALkalinization Factor family protein
Length = 132
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 70 LQGRGYISY-GALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCRG 119
+ GY+S+ A+RRD+ PC+ +GASYYNC PG +PY+R C ITRC G
Sbjct: 82 IDKNGYLSFFAAMRRDSVPCTRKGASYYNCVPGAPPSPYNRSCEHITRCHG 132
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.140 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,541,173
Number of extensions: 73478
Number of successful extensions: 151
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 9
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)