BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0670500 Os02g0670500|J100066I03
(119 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117 88 1e-18
AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139 87 1e-18
AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120 83 3e-17
AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121 77 2e-15
AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111 65 1e-11
AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119 63 3e-11
AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114 63 3e-11
AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111 61 1e-10
AT5G67070.1 | chr5:26768120-26768509 FORWARD LENGTH=130 48 1e-06
>AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117
Length = 116
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 44/52 (84%)
Query: 67 RRVLQGRGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCR 118
RR+L YISYGALRR+T PCS RGASYYNCR G QANPYSRGCSAITRCR
Sbjct: 64 RRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 115
>AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139
Length = 138
Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/52 (82%), Positives = 45/52 (86%)
Query: 67 RRVLQGRGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCR 118
RR+L R YISYGALRR+T PCS RGASYYNCR G QANPYSRGCSAITRCR
Sbjct: 85 RRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136
>AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120
Length = 119
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 44/52 (84%)
Query: 67 RRVLQGRGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCR 118
RR+L + YISYGA+RR++ PCS RGASYYNC+ G QANPYSRGCS ITRCR
Sbjct: 67 RRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118
>AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121
Length = 120
Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 41/52 (78%)
Query: 67 RRVLQGRGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRCR 118
RR+L YISY +L+R++ PCS RGASYYNC+ G QANPYSRGCS I RCR
Sbjct: 68 RRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKIARCR 119
>AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111
Length = 110
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 67 RRVLQGRGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRC 117
R++ R YISYGALR++ PCS RG SYY+C+ +ANPY RGCS IT C
Sbjct: 55 RQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHC 105
>AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119
Length = 118
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 67 RRVLQGRG-YISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRC 117
RRV+ R YISY LRRD PC GASYY CR GQAN Y+RGCS ITRC
Sbjct: 59 RRVMMMRKQYISYETLRRDMVPCQKPGASYYACR-SGQANAYNRGCSVITRC 109
>AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114
Length = 113
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 67 RRVLQGRG-YISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRC 117
RRVL + YI Y LRRD PC GASYY+CR GQAN YSRGC ITRC
Sbjct: 54 RRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCR-SGQANSYSRGCDTITRC 104
>AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111
Length = 110
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 67 RRVLQGRGYISYGALRRDTTPCSVRGASYYNCRPGGQANPYSRGCSAITRC 117
R++ +GR YI Y AL+++ PCS RG SYY+C+ + NPY RGCSAIT C
Sbjct: 55 RQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHC 105
>AT5G67070.1 | chr5:26768120-26768509 FORWARD LENGTH=130
Length = 129
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 33/48 (68%), Gaps = 4/48 (8%)
Query: 75 YISYGALRRDTTPCSVR-GASYY--NC-RPGGQANPYSRGCSAITRCR 118
YISYGAL + PC R G SYY NC R G +PYSRGCS+ITRCR
Sbjct: 81 YISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCR 128
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.472
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,456,644
Number of extensions: 37749
Number of successful extensions: 108
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 9
Length of query: 119
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 34
Effective length of database: 8,776,209
Effective search space: 298391106
Effective search space used: 298391106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)