BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0358100 Os01g0358100|AK105209
(116 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117 91 9e-20
AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120 90 3e-19
AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139 87 1e-18
AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121 83 3e-17
AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111 70 1e-13
AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111 68 1e-12
AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114 65 9e-12
AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119 60 3e-10
AT5G67070.1 | chr5:26768120-26768509 FORWARD LENGTH=130 48 9e-07
>AT4G15800.1 | chr4:8984915-8985265 FORWARD LENGTH=117
Length = 116
Score = 91.3 bits (225), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 50/64 (78%)
Query: 52 GEEAADSATAVVRRVLQQGSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSAI 111
EE + + + RR+L YISYGALRR+T PCS RGASYYNC+ GA+ANPYSRGCSAI
Sbjct: 52 AEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGASYYNCRRGAQANPYSRGCSAI 111
Query: 112 TQCR 115
T+CR
Sbjct: 112 TRCR 115
>AT3G05490.1 | chr3:1591381-1591740 FORWARD LENGTH=120
Length = 119
Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 46/54 (85%)
Query: 62 VVRRVLQQGSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSAITQCR 115
+ RR+L Q YISYGA+RR++ PCS RGASYYNCQ GA+ANPYSRGCS IT+CR
Sbjct: 65 ISRRILAQKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCR 118
>AT3G16570.1 | chr3:5644748-5645164 FORWARD LENGTH=139
Length = 138
Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 46/54 (85%)
Query: 62 VVRRVLQQGSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSAITQCR 115
+ RR+L YISYGALRR+T PCS RGASYYNC+ GA+ANPYSRGCSAIT+CR
Sbjct: 83 INRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCR 136
>AT1G02900.1 | chr1:653976-654338 REVERSE LENGTH=121
Length = 120
Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 47/64 (73%)
Query: 52 GEEAADSATAVVRRVLQQGSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSAI 111
G E + + + RR+L YISY +L+R++ PCS RGASYYNCQ GA+ANPYSRGCS I
Sbjct: 56 GAEEEEMDSEINRRILATTKYISYQSLKRNSVPCSRRGASYYNCQNGAQANPYSRGCSKI 115
Query: 112 TQCR 115
+CR
Sbjct: 116 ARCR 119
>AT2G33775.1 | chr2:14288546-14288878 FORWARD LENGTH=111
Length = 110
Score = 70.5 bits (171), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 40 GVVGADDAFGFPGEEAADSATAVVRRVLQQGSYISYGALRRDTTPCSVRGASYYNCQPGA 99
G +G D + + + RR SYISYGALR++ PCS RG SYY+C+
Sbjct: 36 GCIGEDGELDYLMDSETNRRQLAARR-----SYISYGALRKNNVPCSRRGRSYYDCKKRK 90
Query: 100 EANPYSRGCSAITQC 114
ANPY RGCS IT C
Sbjct: 91 RANPYRRGCSVITHC 105
>AT1G28270.1 | chr1:9883165-9883497 FORWARD LENGTH=111
Length = 110
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 40 GVVGADDAFGFPGEEAADSATAVVRRVLQQGS-YISYGALRRDTTPCSVRGASYYNCQPG 98
G +G DD E DS T RR L +G YI Y AL+++ PCS RG SYY+C+
Sbjct: 36 GCIGEDDEL----ESLMDSETN--RRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKR 89
Query: 99 AEANPYSRGCSAITQC 114
NPY RGCSAIT C
Sbjct: 90 RRNNPYRRGCSAITHC 105
>AT4G13950.1 | chr4:8058268-8058609 REVERSE LENGTH=114
Length = 113
Score = 64.7 bits (156), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 52 GEEAADSATAVVRRVLQ-QGSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSA 110
GE+ T + RRVL Q YI Y LRRD PC GASYY+C+ G +AN YSRGC
Sbjct: 42 GEDEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSG-QANSYSRGCDT 100
Query: 111 ITQC 114
IT+C
Sbjct: 101 ITRC 104
>AT3G23805.1 | chr3:8586467-8586823 FORWARD LENGTH=119
Length = 118
Score = 59.7 bits (143), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 64 RRVLQQGSYISYGALRRDTTPCSVRGASYYNCQPGAEANPYSRGCSAITQC 114
R ++ + YISY LRRD PC GASYY C+ G +AN Y+RGCS IT+C
Sbjct: 60 RVMMMRKQYISYETLRRDMVPCQKPGASYYACRSG-QANAYNRGCSVITRC 109
>AT5G67070.1 | chr5:26768120-26768509 FORWARD LENGTH=130
Length = 129
Score = 48.1 bits (113), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 38 ELGVVGADDAFGFPGEE--AADSATAVVRRVLQQGSYISYGALRRDTTPCSVR-GASYY- 93
E ++ +++F E+ D + RR YISYGAL + PC R G SYY
Sbjct: 48 EFDIIDGEESFEVTEEDDGVTDRRSLYWRRT---KYYISYGALSANRVPCPPRSGRSYYT 104
Query: 94 -NC-QPGAEANPYSRGCSAITQCR 115
NC + +PYSRGCS+IT+CR
Sbjct: 105 HNCFRARGPVHPYSRGCSSITRCR 128
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,929,399
Number of extensions: 60443
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 9
Length of query: 116
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 31
Effective length of database: 8,776,209
Effective search space: 272062479
Effective search space used: 272062479
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)