BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0538500 Os12g0538500|AK059316
(292 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0538500 Similar to PGPD14 protein 544 e-155
Os03g0348900 Zinc finger, CHY-type domain containing protein 320 8e-88
Os10g0456800 Similar to PGPD14 protein 298 4e-81
Os01g0719100 Similar to PGPD14 protein 294 5e-80
Os03g0145900 Zinc finger, CHY-type domain containing protein 249 1e-66
Os05g0551000 Zinc finger, CHY-type domain containing protein 186 1e-47
Os01g0689300 Conserved hypothetical protein 66 4e-11
>Os12g0538500 Similar to PGPD14 protein
Length = 292
Score = 544 bits (1401), Expect = e-155, Method: Compositional matrix adjust.
Identities = 266/292 (91%), Positives = 266/292 (91%)
Query: 1 MGGAHFPXXXXXXXXXXXXXXPLRDVGKMEHGCEHYRRRCKIVAPCCGEVFACRHCHNDA 60
MGGAHFP PLRDVGKMEHGCEHYRRRCKIVAPCCGEVFACRHCHNDA
Sbjct: 1 MGGAHFPGEGEVVAGEGDAVVPLRDVGKMEHGCEHYRRRCKIVAPCCGEVFACRHCHNDA 60
Query: 61 TASGDRHTICRQDVEKVVCLLCDTEQPVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFH 120
TASGDRHTICRQDVEKVVCLLCDTEQPVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFH
Sbjct: 61 TASGDRHTICRQDVEKVVCLLCDTEQPVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFH 120
Query: 121 CYDCGICRVGGKENYFHCAKCGSCYAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRV 180
CYDCGICRVGGKENYFHCAKCGSCYAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRV
Sbjct: 121 CYDCGICRVGGKENYFHCAKCGSCYAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRV 180
Query: 181 LDCGHTMHMECFSEMVEHNKYTCPICSKTALDMTHHWALLDQEIEATIMPPVYRYKVWVL 240
LDCGHTMHMECFSEMVEHNKYTCPICSKTALDMTHHWALLDQEIEATIMPPVYRYKVWVL
Sbjct: 181 LDCGHTMHMECFSEMVEHNKYTCPICSKTALDMTHHWALLDQEIEATIMPPVYRYKVWVL 240
Query: 241 CNDCNKVSEVDFHVIGHKCSHCNSYNTRSTSRPADLXXXXXXXXXXXXENNP 292
CNDCNKVSEVDFHVIGHKCSHCNSYNTRSTSRPADL ENNP
Sbjct: 241 CNDCNKVSEVDFHVIGHKCSHCNSYNTRSTSRPADLSGSSSPSTSDSSENNP 292
>Os03g0348900 Zinc finger, CHY-type domain containing protein
Length = 260
Score = 320 bits (820), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 151/248 (60%), Positives = 186/248 (75%), Gaps = 2/248 (0%)
Query: 27 GKMEHGCEHYRRRCKIVAPCCGEVFACRHCHNDATASGDRHTICRQDVEKVVCLLCDTEQ 86
G+M GC+HYRRRC+I APCC +VF CRHCHN++T G H + R VE V+CL+CDTEQ
Sbjct: 12 GRMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNESTKDG--HELDRHAVESVICLVCDTEQ 69
Query: 87 PVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFHCYDCGICRVGGKENYFHCAKCGSCYA 146
PV+QVC NCGV MGEYFC CKF+DDD ++ FHC DCGICRVGGK+N+FHC KCGSCY+
Sbjct: 70 PVAQVCYNCGVCMGEYFCSACKFFDDDVDREHFHCQDCGICRVGGKDNFFHCEKCGSCYS 129
Query: 147 VALRDNHQCVENSMRQNCPICYEYLFDSLKGTRVLDCGHTMHMECFSEMVEHNKYTCPIC 206
V+LRD H C+ENSM+ NCPICYEYLFDSL+ T VL CGHTMH++CF EM++H+K++CPIC
Sbjct: 130 VSLRDKHCCIENSMKNNCPICYEYLFDSLRETSVLRCGHTMHLQCFHEMLKHDKFSCPIC 189
Query: 207 SKTALDMTHHWALLDQEIEATIMPPVYRYKVWVLCNDCNKVSEVDFHVIGHKCSHCNSYN 266
S DM LD EIEA ++ Y K W++CNDC ++V V GHKC HC S+N
Sbjct: 190 SMPIFDMDKFLRALDAEIEANMLHIDYMGKGWIVCNDCRDTTQVYARVAGHKCCHCQSHN 249
Query: 267 TRSTSRPA 274
T + P
Sbjct: 250 TCRVAAPV 257
>Os10g0456800 Similar to PGPD14 protein
Length = 266
Score = 298 bits (762), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/254 (55%), Positives = 177/254 (69%), Gaps = 9/254 (3%)
Query: 30 EHGCEHYRRRCKIVAPCCGEVFACRHCHNDATAS-----GDRHTICRQDVEKVVCLLCDT 84
+HGCEHY R C+I APCCGEVF CRHCHN+A S DRH I R +++KV+C LCD
Sbjct: 7 QHGCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVICSLCDK 66
Query: 85 EQPVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFHCYDCGICRVGGKENYFHCAKCGSC 144
EQ V Q C CG MG+YFC+ C F+DDD K Q+HC CGICR GG + +FHC KCG C
Sbjct: 67 EQDVQQYCSGCGACMGKYFCEKCNFFDDDVSKNQYHCDGCGICRTGGVDKFFHCDKCGCC 126
Query: 145 YAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRVLDCGHTMHMECFSEMVEHNKYTCP 204
Y+ LRD+H CVE +M NCP+C+EYLFDS K VL CGHT+H+EC + M H+ + CP
Sbjct: 127 YSNVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHCGHTIHLECLNVMRAHHHFACP 186
Query: 205 ICSKTALDMTHHWALLDQEIEATIMPPVYRYK-VWVLCNDCNKVSEVDFHVIGHKCSHCN 263
+CS++A DM+ W LD+E+ AT MP Y+ K +W+LCNDC S V+FHV+ KC C+
Sbjct: 187 VCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCNDCGATSNVNFHVLAQKCPGCS 246
Query: 264 SYNTRST---SRPA 274
SYNTR T RPA
Sbjct: 247 SYNTRETRGCGRPA 260
>Os01g0719100 Similar to PGPD14 protein
Length = 302
Score = 294 bits (753), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 138/248 (55%), Positives = 177/248 (71%), Gaps = 6/248 (2%)
Query: 27 GKMEHGCEHYRRRCKIVAPCCGEVFACRHCHNDATAS-----GDRHTICRQDVEKVVCLL 81
G M++GC HYRRRC+I APCC E+F CRHCHN+ S RH + R +V++V+C L
Sbjct: 55 GIMQYGCAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELPRHEVQQVICSL 114
Query: 82 CDTEQPVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFHCYDCGICRVGGKENYFHCAKC 141
C TEQ V QVCI+CGV MG+YFC+VCK +DDD K Q+HC CGICR+GGKEN+FHC+KC
Sbjct: 115 CGTEQEVRQVCISCGVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIGGKENFFHCSKC 174
Query: 142 GSCYAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRVLDCGHTMHMECFSEMVEHNKY 201
G CY++ L+++H CVE +M +CPIC+EYLF+S VL CGHT+H++C EM EH ++
Sbjct: 175 GCCYSIVLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKCLREMEEHCQF 234
Query: 202 TCPICSKTALDMTHHWALLDQEIEATIMPPVYRYKVWVLCNDCNKVSEVDFHVIGHKCSH 261
CP+CSK+ DM+ W LD+E+ ATI V +LCNDC SEV FH+I HKC
Sbjct: 235 ACPLCSKSVCDMSKAWERLDEEL-ATISDTCDNKMVRILCNDCGATSEVQFHLIAHKCQK 293
Query: 262 CNSYNTRS 269
C SYNTR
Sbjct: 294 CKSYNTRQ 301
>Os03g0145900 Zinc finger, CHY-type domain containing protein
Length = 225
Score = 249 bits (637), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 113/202 (55%), Positives = 144/202 (71%), Gaps = 2/202 (0%)
Query: 75 EKVVCLLCDTEQPVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFHCYDCGICRVGGKEN 134
+V+C LC+ EQ V Q C NCG +G+YFC C FYDDD K QFHC CGICR GG EN
Sbjct: 18 SQVICSLCNKEQDVQQDCSNCGACLGKYFCAKCNFYDDDVSKNQFHCDGCGICRTGGAEN 77
Query: 135 YFHCAKCGSCYAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRVLDCGHTMHMECFSE 194
+FHC KCG CY+ L+D+H CVE +M NCP+C+EYLFDS K L CGHT+H+EC E
Sbjct: 78 FFHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKDISALHCGHTIHLECLYE 137
Query: 195 MVEHNKYTCPICSKTALDMTHHWALLDQEIEATIMPPVYRYK-VWVLCNDCNKVSEVDFH 253
M H +++CP+C ++A DM+H W LDQE+ A+ MP +Y+ K +W+LCNDC S V FH
Sbjct: 138 MRSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKMIWILCNDCGTTSNVQFH 197
Query: 254 VIGHKCSHCNSYNTRST-SRPA 274
++GHKC C+SYNTR T + PA
Sbjct: 198 ILGHKCPGCSSYNTRQTRAAPA 219
>Os05g0551000 Zinc finger, CHY-type domain containing protein
Length = 811
Score = 186 bits (473), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 147/251 (58%), Gaps = 14/251 (5%)
Query: 24 RDVGKMEHGCEHYRRRCKIVAPCCGEVFACRHCHNDATASGDRHTICRQDVEKVVCLLCD 83
RD GCEHY+R+CK+VA CC ++F CR CH+ + HT+ R+ +++C+ C
Sbjct: 556 RDPENQIFGCEHYKRKCKLVAACCNKLFTCRFCHDKVSD----HTMERKATVEMMCMQCL 611
Query: 84 TEQPVSQVCINC---GVNMGEYFCDVCKFYDDDTEKGQFHCYDCGICRVGGKE--NYFHC 138
QPV C G++M +Y+C VCKF+DD E+ +HC C +CR+G ++FHC
Sbjct: 612 KVQPVGPNCQTPSCNGLSMAKYYCSVCKFFDD--ERSVYHCPFCNLCRLGQGLGIDFFHC 669
Query: 139 AKCGSCYAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRVLDCGHTMHMECFSEMVEH 198
KC C + L + H+C E + NCPIC ++LF S + L CGH MH CF +
Sbjct: 670 MKCNCCLGMKLIE-HKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFMHSACF-QAYTC 727
Query: 199 NKYTCPICSKTALDMTHHWALLDQEIEATIMPPVYRYKVW-VLCNDCNKVSEVDFHVIGH 257
+ YTCPICSK+ DMT ++ +LD + A +P YR + +LCNDC + FH + H
Sbjct: 728 SHYTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCERKGRSRFHWLYH 787
Query: 258 KCSHCNSYNTR 268
KC C SYNTR
Sbjct: 788 KCGFCGSYNTR 798
>Os01g0689300 Conserved hypothetical protein
Length = 87
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 112 DDTEKGQFHCYDCGICRVGGKE--NYFHCAKCGSCYAVALRDNHQCVENSMRQNCPICYE 169
D + +HC C +CR+G ++FHC KC C + L + H+C E + NCPIC +
Sbjct: 3 DFFFRTVYHCPFCNLCRLGKGLGVDFFHCMKCNCCLGMKLTE-HKCREKGLETNCPICCD 61
Query: 170 YLFDSLKGTRVLDCGHTMHMECFS 193
+LF S R L CGH MH CF
Sbjct: 62 FLFTSSAAVRALPCGHFMHSACFQ 85
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,316,885
Number of extensions: 426018
Number of successful extensions: 1438
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1410
Number of HSP's successfully gapped: 7
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)