Os03g0348900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CHY-type domain containing protein.
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Os03g0348900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CHY-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.91 | 0.438 | 6.41 | 0.924 | 0.851 | -0.849 | 0.574 | 1.65 | -0.0455 | 3.01 | 15.37 | 10 | -- | -- |
| 88.63 | 0.442 | 6.43 | 0.681 | 0.838 | -0.847 | 0.113 | -- | -0.11 | 3.01 | 15.37 | 10 | -- | -- |
| 87.72 | 0.44 | 6.42 | 0.826 | 0.842 | -0.872 | -- | 1.03 | -0.0699 | 3.02 | 15.37 | 10 | -- | -- |
| 88.67 | 0.441 | 6.44 | 0.68 | 0.837 | -0.852 | -- | -- | -0.11 | 3 | 15.37 | 10 | -- | -- |
| 114.44 | 0.498 | 6.38 | 1.09 | -- | -1.58 | -- | 1.31 | 0.0994 | -- | 18.1 | 13 | -- | -- |
| 95.95 | 0.459 | 6.46 | 0.515 | 1.08 | -- | 0.241 | -- | -0.233 | 2.85 | -- | -- | -- | -- |
| 96.14 | 0.459 | 6.46 | 0.51 | 1.08 | -- | -- | -- | -0.235 | 2.83 | -- | -- | -- | -- |
| 115.54 | 0.501 | 6.4 | 0.876 | -- | -1.6 | -- | -- | 0.0391 | -- | 17.48 | 10 | -- | -- |
| 99.72 | 0.468 | 6.46 | -- | 0.94 | -0.541 | -- | -- | -0.225 | 2.93 | 15.3 | 8 | -- | -- |
| 164.25 | 0.599 | 6.46 | 0.556 | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
| 102.99 | 0.475 | 6.48 | -- | 1.09 | -- | -- | -- | -0.291 | 2.84 | -- | -- | -- | -- |
| 130.35 | 0.533 | 6.45 | -- | -- | -1.31 | -- | -- | -0.159 | -- | 24.3 | 7 | -- | -- |
| 172.41 | 0.613 | 6.47 | -- | -- | -- | -- | -- | -0.269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 2 | 84.58 | temperature | 15 | 10 | > th | dose dependent | sin | 0 | NA |
| 3 | 84.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 5 | 84.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 8 | 84.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 9 | 84.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 11 | 84.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 20 |
| 27 | 85.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 75 | 85.71 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 80 | 85.74 | temperature | 15 | 90 | > th | dose dependent | rect. | 22 | 17 |
| 81 | 85.74 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 94 | 85.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 133 | 86.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 153 | 86.27 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 162 | 86.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 22 | 18 |
| 179 | 86.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 13 |
| 209 | 86.56 | humidity | 80 | 270 | < th | dose independent | rect. | 7 | 8 |
| 219 | 86.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 223 | 86.63 | temperature | 20 | 90 | > th | dose independent | rect. | 22 | 17 |
| 231 | 86.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 333 | 86.97 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 404 | 87.18 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 20 |
| 440 | 87.26 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 18 |
| 531 | 87.39 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 532 | 87.40 | humidity | 80 | 270 | < th | dose independent | rect. | 22 | 17 |
| 544 | 87.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 576 | 87.49 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 22 |
| 577 | 87.49 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 584 | 87.52 | humidity | 80 | 270 | < th | dose independent | sin | 3 | NA |
| 590 | 87.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 14 |
| 640 | 87.61 | humidity | 70 | 720 | > th | dose dependent | rect. | 8 | 4 |
| 655 | 87.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 22 |
| 656 | 87.62 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 680 | 87.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 685 | 87.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 690 | 87.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 771 | 87.79 | humidity | 70 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 791 | 87.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 794 | 87.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 801 | 87.83 | humidity | 70 | 10 | > th | dose dependent | sin | 22 | NA |
| 804 | 87.84 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 9 |
| 819 | 87.85 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 10 |
| 838 | 87.88 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 876 | 87.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 887 | 87.94 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 920 | 87.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 921 | 87.98 | humidity | 80 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 944 | 88.01 | radiation | 10 | 270 | > th | dose independent | sin | 3 | NA |
| 945 | 88.01 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 952 | 88.01 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 986 | 88.06 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 8 |