BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0348900 Os03g0348900|AK059950
(260 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18650.1 | chr5:6218260-6220374 FORWARD LENGTH=268 350 5e-97
AT3G62970.1 | chr3:23270636-23272698 FORWARD LENGTH=288 305 2e-83
AT5G22920.1 | chr5:7665143-7667031 FORWARD LENGTH=292 277 3e-75
AT5G25560.2 | chr5:8899486-8901453 FORWARD LENGTH=329 241 4e-64
AT1G18910.1 | chr1:6532706-6537993 REVERSE LENGTH=1255 190 8e-49
AT1G74770.1 | chr1:28089695-28094834 REVERSE LENGTH=1260 168 3e-42
AT3G18290.1 | chr3:6274308-6280174 FORWARD LENGTH=1255 162 2e-40
>AT5G18650.1 | chr5:6218260-6220374 FORWARD LENGTH=268
Length = 267
Score = 350 bits (898), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 168/266 (63%), Positives = 207/266 (77%), Gaps = 7/266 (2%)
Query: 1 MELDDASRHGFGRMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNESTK------DGHELDR 54
ME R FG+MGFGCKHY+RRC+IRAPCCN+VF CRHCHNEST D H+L R
Sbjct: 1 MEASPNDRLHFGKMGFGCKHYKRRCQIRAPCCNEVFDCRHCHNESTSTLRNIYDRHDLVR 60
Query: 55 HAVESVICLVCDTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVDREHFHCQDCGICRVGG 114
V+ VIC VCDTEQP AQVC NCGV MGEYFCS C F+DDD +++ FHC DCGICRVGG
Sbjct: 61 QDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQFHCDDCGICRVGG 120
Query: 115 KDNFFHCEKCGSCYSVSLRDKHCCIENSMKNNCPICYEYLFDSLRETSVLRCGHTMHLQC 174
++NFFHC+KCGSCY+V LR+ H C+ENSM+++CPICYEYLFDSL++T+V++CGHTMH++C
Sbjct: 121 RENFFHCKKCGSCYAVGLRNNHRCVENSMRHHCPICYEYLFDSLKDTNVMKCGHTMHVEC 180
Query: 175 FHEMLKHDKFSCPICSMPIFDMDKFLRALDAEIEANMLHIDYMGKG-WIVCNDCRDTTQV 233
++EM+K DKF CPICS + DM K + LD EIEA + DY K WI+CNDC DTT+V
Sbjct: 181 YNEMIKRDKFCCPICSRSVIDMSKTWQRLDEEIEATAMPSDYRDKKVWILCNDCNDTTEV 240
Query: 234 YARVAGHKCCHCQSHNTCRVAAPVLP 259
+ + G KC HC+S+NT +A PVLP
Sbjct: 241 HFHIIGQKCGHCRSYNTRAIAPPVLP 266
>AT3G62970.1 | chr3:23270636-23272698 FORWARD LENGTH=288
Length = 287
Score = 305 bits (781), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 139/256 (54%), Positives = 182/256 (71%), Gaps = 6/256 (2%)
Query: 11 FGRMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNEST------KDGHELDRHAVESVICLV 64
FG+ FGC+HY+RRC+IRAPCCN +F CRHCHN+S K+ H+L R V+ V+C +
Sbjct: 28 FGKFQFGCEHYKRRCKIRAPCCNLIFSCRHCHNDSANSLPDPKERHDLVRQNVKQVVCSI 87
Query: 65 CDTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVDREHFHCQDCGICRVGGKDNFFHCEKC 124
C TEQ VA+VC NCGV MGEYFC CKFFDDD+ +E FHC DCGICRVGG+D FFHC+ C
Sbjct: 88 CQTEQEVAKVCSNCGVNMGEYFCDICKFFDDDISKEQFHCDDCGICRVGGRDKFFHCQNC 147
Query: 125 GSCYSVSLRDKHCCIENSMKNNCPICYEYLFDSLRETSVLRCGHTMHLQCFHEMLKHDKF 184
G+CY + LRDKH CIENS KN+CP+CYEYLFDS++ V++CGHTMH+ CF +M+ +++
Sbjct: 148 GACYGMGLRDKHSCIENSTKNSCPVCYEYLFDSVKAAHVMKCGHTMHMDCFEQMINENQY 207
Query: 185 SCPICSMPIFDMDKFLRALDAEIEANMLHIDYMGKGWIVCNDCRDTTQVYARVAGHKCCH 244
CPIC+ + DM LD EI A + ++Y + I+CNDC ++ + GHKC
Sbjct: 208 RCPICAKSMVDMSPSWHLLDFEISATEMPVEYKFEVSILCNDCNKGSKAMFHILGHKCSD 267
Query: 245 CQSHNTCRVAAPVLPA 260
C S+NT R++ P P
Sbjct: 268 CGSYNTRRISTPQDPV 283
>AT5G22920.1 | chr5:7665143-7667031 FORWARD LENGTH=292
Length = 291
Score = 277 bits (709), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/249 (54%), Positives = 174/249 (69%), Gaps = 10/249 (4%)
Query: 11 FGRMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNESTKDG--------HELDRHAVESVIC 62
G +GC HYRRRC+IRAPCC+++F CRHCHNE+ KD HEL RH V VIC
Sbjct: 20 IGSGHYGCSHYRRRCKIRAPCCDEIFDCRHCHNEA-KDSLHIEQHHRHELPRHEVSKVIC 78
Query: 63 LVCDTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVDREHFHCQDCGICRVGGKDNFFHCE 122
+C+TEQ V Q C NCGVCMG+YFCS CKFFDDD+ ++ +HC +CGICR GG++NFFHC+
Sbjct: 79 SLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGICRTGGEENFFHCK 138
Query: 123 KCGSCYSVSLRDKHCCIENSMKNNCPICYEYLFDSLRETSVLRCGHTMHLQCFHEMLKHD 182
+C CYS + DKH C+E +M +NCP+C+EYLFDS R+ +VLRCGHTMHL+C +M H+
Sbjct: 139 RCRCCYSKIMEDKHQCVEGAMHHNCPVCFEYLFDSTRDITVLRCGHTMHLECTKDMGLHN 198
Query: 183 KFSCPICSMPIFDMDKFLRALDAEIEANMLHIDYMGKG-WIVCNDCRDTTQVYARVAGHK 241
+++CP+CS I DM + LD E+ A + Y K WI+CNDC T V + HK
Sbjct: 199 RYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMVWILCNDCGSNTNVRFHLIAHK 258
Query: 242 CCHCQSHNT 250
C C S+NT
Sbjct: 259 CSSCGSYNT 267
>AT5G25560.2 | chr5:8899486-8901453 FORWARD LENGTH=329
Length = 328
Score = 241 bits (614), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 148/215 (68%), Gaps = 7/215 (3%)
Query: 12 GRMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNES-------TKDGHELDRHAVESVICLV 64
G M +GC HYRRRC IRAPCCN++F C HCH E+ K H++ RH VE VICL+
Sbjct: 57 GLMEYGCPHYRRRCCIRAPCCNEIFGCHHCHYEAKNNINVDQKQRHDIPRHQVEQVICLL 116
Query: 65 CDTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVDREHFHCQDCGICRVGGKDNFFHCEKC 124
C TEQ V Q+C +CGVCMG+YFC CK +DDD ++ +HC CGICR+GG++NFFHC KC
Sbjct: 117 CGTEQEVGQICIHCGVCMGKYFCKVCKLYDDDTSKKQYHCDGCGICRIGGRENFFHCYKC 176
Query: 125 GSCYSVSLRDKHCCIENSMKNNCPICYEYLFDSLRETSVLRCGHTMHLQCFHEMLKHDKF 184
G CYS+ L++ H C+E +M ++CPIC+E+LF+S + +VL CGHT+H +C EM H ++
Sbjct: 177 GCCYSILLKNGHPCVEGAMHHDCPICFEFLFESRNDVTVLPCGHTIHQKCLEEMRDHYQY 236
Query: 185 SCPICSMPIFDMDKFLRALDAEIEANMLHIDYMGK 219
+CP+CS + DM K D EI A + Y +
Sbjct: 237 ACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYQNR 271
>AT1G18910.1 | chr1:6532706-6537993 REVERSE LENGTH=1255
Length = 1254
Score = 190 bits (482), Expect = 8e-49, Method: Composition-based stats.
Identities = 97/243 (39%), Positives = 136/243 (55%), Gaps = 11/243 (4%)
Query: 13 RMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNESTKDGHELDRHAVESVICLVCDTEQPVA 72
++ FGCKHY+R C++ APCCN ++ C CH+E H LDR + ++C+ C QPV
Sbjct: 1015 KLIFGCKHYKRSCKLLAPCCNKLYTCIRCHDEEVD--HLLDRKQITKMMCMKCMIIQPVG 1072
Query: 73 --QVCYNCGVCMGEYFCSACKFFDDDVDREHFHCQDCGICRVGG--KDNFFHCEKCGSCY 128
+C MG+Y+C CK FDDD RE +HC C +CR+G ++FHC KC +C
Sbjct: 1073 ASCSNISCSSSMGKYYCKICKLFDDD--REIYHCPYCNLCRLGKGLSIDYFHCMKCNACM 1130
Query: 129 SVSLRDKHCCIENSMKNNCPICYEYLFDSLRETSVLRCGHTMHLQCFHEMLKHDKFSCPI 188
S L +H C E +++NCPIC+EY+F S L CGH MH CF E ++CPI
Sbjct: 1131 S-RLIVEHVCREKCLEDNCPICHEYIFTSNSPVKALPCGHVMHSTCFQEY-TCSHYTCPI 1188
Query: 189 CSMPIFDMDKFLRALDAEIEANMLHIDYMGKGWIV-CNDCRDTTQVYARVAGHKCCHCQS 247
CS + DM + R LDA + + +Y+ + ++ CNDC HKC C S
Sbjct: 1189 CSKSLGDMQVYFRMLDALLAEQKMPDEYLNQTQVILCNDCGRKGNAPYHWLYHKCSSCAS 1248
Query: 248 HNT 250
+NT
Sbjct: 1249 YNT 1251
>AT1G74770.1 | chr1:28089695-28094834 REVERSE LENGTH=1260
Length = 1259
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/242 (39%), Positives = 136/242 (56%), Gaps = 15/242 (6%)
Query: 16 FGCKHYRRRCRIRAPCCNDVFHCRHCHNESTKDGHELDRHAVESVICLVCDTEQPVAQVC 75
FGC HY+R C++ APCC+ +F C CH+E H +DR + ++C+ C QP+ C
Sbjct: 1023 FGCNHYKRNCKLLAPCCDKLFTCIRCHDEEA--DHSVDRKQITKMMCMKCLLIQPIGANC 1080
Query: 76 YN--CGVCMGEYFCSACKFFDDDVDREHFHCQDCGICRVG---GKDNFFHCEKCGSCYSV 130
N C MG+YFC CK +DD+ R+ +HC C +CRVG G D +FHC KC +C S
Sbjct: 1081 SNTSCKSSMGKYFCKICKLYDDE--RKIYHCPYCNLCRVGKGLGID-YFHCMKCNACMSR 1137
Query: 131 SLRDKHCCIENSMKNNCPICYEYLFDSLRETSVLRCGHTMHLQCFHEML-KHDKFSCPIC 189
+L + H C E +++NCPIC+EY+F S L CGH MH CF E H ++CP+C
Sbjct: 1138 TLVE-HVCREKCLEDNCPICHEYIFTSSSPVKALPCGHLMHSTCFQEYTCSH--YTCPVC 1194
Query: 190 SMPIFDMDKFLRALDAEIEANMLHIDYMGKGWIV-CNDCRDTTQVYARVAGHKCCHCQSH 248
S + DM + + LDA + + +Y K ++ CNDC HKC C S+
Sbjct: 1195 SKSLGDMQVYFKMLDALLAEEKMPDEYSNKTQVILCNDCGRKGNAPYHWLYHKCTTCGSY 1254
Query: 249 NT 250
N+
Sbjct: 1255 NS 1256
>AT3G18290.1 | chr3:6274308-6280174 FORWARD LENGTH=1255
Length = 1254
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/252 (38%), Positives = 137/252 (54%), Gaps = 16/252 (6%)
Query: 16 FGCKHYRRRCRIRAPCCNDVFHCRHCHNESTKDGHELDRHAVESVICLVCDTEQPVAQVC 75
+GC+HY+R C++RA CC+ +F CR CH++ + H +DR V ++C+ C QPV +C
Sbjct: 1004 YGCEHYKRNCKLRAACCDQLFTCRFCHDKVS--DHSMDRKLVTEMLCMRCLKVQPVGPIC 1061
Query: 76 YNC---GVCMGEYFCSACKFFDDDVDREHFHCQDCGICRVG---GKDNFFHCEKCGSCYS 129
G M +++CS CK FDD+ R +HC C +CRVG G D FFHC C C
Sbjct: 1062 TTPSCDGFPMAKHYCSICKLFDDE--RAVYHCPFCNLCRVGEGLGID-FFHCMTCNCCLG 1118
Query: 130 VSLRDKHCCIENSMKNNCPICYEYLFDSLRETSVLRCGHTMHLQCFHEML-KHDKFSCPI 188
+ L + H C+E S++ NCPIC E+LF S L CGH MH CF H ++CPI
Sbjct: 1119 MKLVN-HKCLEKSLETNCPICCEFLFTSSEAVRALPCGHYMHSACFQAYTCSH--YTCPI 1175
Query: 189 CSMPIFDMDKFLRALDAEIEANMLHIDYMGK-GWIVCNDCRDTTQVYARVAGHKCCHCQS 247
C + DM + LDA + A L +Y + I+CNDC HKC C S
Sbjct: 1176 CGKSLGDMAVYFGMLDALLAAEELPEEYKNRCQDILCNDCERKGTTRFHWLYHKCGSCGS 1235
Query: 248 HNTCRVAAPVLP 259
+NT + + +P
Sbjct: 1236 YNTRVIKSETIP 1247
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.142 0.511
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,473,450
Number of extensions: 288970
Number of successful extensions: 1395
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1376
Number of HSP's successfully gapped: 7
Length of query: 260
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 163
Effective length of database: 8,447,217
Effective search space: 1376896371
Effective search space used: 1376896371
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 110 (47.0 bits)