Os05g0551000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CHY-type domain containing protein.
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Os05g0551000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CHY-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.9 | 0.351 | 8.16 | -0.211 | 1.95 | -1.42 | 0.294 | 2.51 | 0.0865 | 21 | 0.3 | 573 | -- | -- |
| 70.13 | 0.39 | 8.16 | -0.194 | 1.99 | -1.49 | 0.593 | -- | 0.0872 | 20.7 | 0.3531 | 569 | -- | -- |
| 56.18 | 0.349 | 8.16 | -0.223 | 1.95 | -1.42 | -- | 2.55 | 0.0845 | 21 | 0.3004 | 575 | -- | -- |
| 71.42 | 0.394 | 8.17 | -0.29 | 1.99 | -1.49 | -- | -- | 0.073 | 20.8 | 0.36 | 571 | -- | -- |
| 96.88 | 0.461 | 8.13 | -0.307 | -- | -1.35 | -- | 0.527 | 0.0119 | -- | 0.3004 | 575 | -- | -- |
| 75.05 | 0.406 | 8.17 | -0.432 | 1.89 | -- | -0.561 | -- | -0.00435 | 23.7 | -- | -- | -- | -- |
| 76.37 | 0.409 | 8.17 | -0.408 | 1.89 | -- | -- | -- | -0.00124 | 23.6 | -- | -- | -- | -- |
| 95.44 | 0.455 | 8.17 | -0.337 | -- | -1.39 | -- | -- | -0.0242 | -- | 0.6 | 36 | -- | -- |
| 73.61 | 0.4 | 8.16 | -- | 1.99 | -1.56 | -- | -- | 0.0986 | 20.7 | 0.36 | 565 | -- | -- |
| 300.87 | 0.811 | 8.12 | -0.355 | -- | -- | -- | -- | 0.0208 | -- | -- | -- | -- | -- |
| 80.76 | 0.42 | 8.16 | -- | 1.89 | -- | -- | -- | 0.0442 | 23.6 | -- | -- | -- | -- |
| 98.15 | 0.461 | 8.16 | -- | -- | -1.39 | -- | -- | -0.027 | -- | 0.55 | 36 | -- | -- |
| 304.19 | 0.814 | 8.12 | -- | -- | -- | -- | -- | 0.0601 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.40 | wind | 5.0 | 720 | < th | dose independent | rect. | 7 | 4 |
| 2 | 54.09 | wind | 5.0 | 720 | < th | dose independent | rect. | 7 | 6 |
| 7 | 55.68 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 22 |
| 12 | 56.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 13 | 56.03 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 16 | 56.11 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 22 |
| 20 | 56.30 | wind | 5.0 | 720 | < th | dose independent | rect. | 7 | 10 |
| 30 | 56.62 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 22 |
| 32 | 56.65 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 20 |
| 35 | 56.73 | wind | 5.0 | 720 | < th | dose independent | rect. | 8 | 1 |
| 44 | 56.82 | radiation | 1.0 | 720 | < th | dose independent | rect. | 21 | 22 |
| 64 | 57.13 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 7 |
| 71 | 57.28 | wind | 5.0 | 720 | < th | dose independent | sin | 2 | NA |
| 73 | 57.31 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 5 |
| 81 | 57.38 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 13 | 15 |
| 98 | 57.51 | radiation | 1.0 | 720 | < th | dose independent | rect. | 13 | 15 |
| 102 | 57.54 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 120 | 57.71 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 23 |
| 133 | 57.89 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 137 | 57.91 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 139 | 57.92 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 151 | 58.01 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 176 | 58.21 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 12 |
| 177 | 58.21 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 181 | 58.22 | wind | 7.0 | 720 | < th | dose independent | rect. | 23 | 20 |
| 192 | 58.28 | radiation | 1.0 | 720 | > th | dose independent | sin | 23 | NA |
| 194 | 58.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 12 |
| 197 | 58.30 | radiation | 1.0 | 720 | > th | dose independent | rect. | 5 | 11 |
| 221 | 58.37 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 18 | 14 |
| 223 | 58.37 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 254 | 58.59 | wind | 9.0 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 256 | 58.60 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 266 | 58.66 | radiation | 1.0 | 720 | > th | dose independent | rect. | 5 | 14 |
| 279 | 58.70 | radiation | 1.0 | 720 | > th | dose independent | no | NA | NA |
| 336 | 58.72 | radiation | 1.0 | 720 | < th | dose independent | no | NA | NA |
| 345 | 58.75 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 23 |
| 352 | 58.79 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 20 |
| 355 | 58.79 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 366 | 58.84 | temperature | 25.0 | 720 | > th | dose independent | rect. | 8 | 5 |
| 375 | 58.86 | wind | 9.0 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 393 | 58.89 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 23 |
| 404 | 58.92 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 466 | 59.12 | humidity | 60.0 | 270 | > th | dose independent | rect. | 23 | 12 |
| 477 | 59.16 | wind | 9.0 | 720 | < th | dose dependent | rect. | 7 | 6 |
| 495 | 59.22 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 20 |
| 496 | 59.22 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 525 | 59.26 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 4 | 17 |
| 526 | 59.26 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 4 | 17 |
| 527 | 59.26 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 550 | 59.32 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 2 | 14 |
| 556 | 59.32 | radiation | 1.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 557 | 59.32 | radiation | 1.0 | 720 | < th | dose dependent | sin | 18 | NA |
| 560 | 59.32 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 2 | 14 |
| 576 | 59.37 | radiation | 1.0 | 720 | < th | dose independent | sin | 18 | NA |
| 585 | 59.39 | wind | 7.0 | 720 | < th | dose independent | rect. | 7 | 19 |
| 641 | 59.53 | temperature | 25.0 | 720 | > th | dose independent | rect. | 9 | 2 |
| 643 | 59.53 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 648 | 59.56 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 13 |
| 716 | 59.78 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 18 |
| 718 | 59.78 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 18 |
| 736 | 59.82 | temperature | 10.0 | 720 | > th | dose dependent | sin | 3 | NA |
| 757 | 59.87 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 19 | 4 |
| 759 | 59.87 | temperature | 10.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 760 | 59.87 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 762 | 59.87 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 16 | 10 |
| 765 | 59.88 | wind | 7.0 | 10 | < th | dose independent | sin | 21 | NA |
| 766 | 59.88 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 12 |
| 791 | 59.95 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 4 | 19 |
| 796 | 59.95 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 797 | 59.96 | temperature | 25.0 | 270 | < th | dose independent | sin | 5 | NA |
| 842 | 60.06 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 4 | 10 |
| 845 | 60.06 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 4 | 10 |
| 877 | 60.13 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 15 |
| 878 | 60.14 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 10 |
| 879 | 60.14 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 10 |
| 916 | 60.18 | atmosphere | 1015.0 | 720 | < th | dose independent | rect. | 2 | 14 |
| 988 | 60.31 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 13 |