BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0551000 Os05g0551000|AK068028
(811 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0551000 Zinc finger, CHY-type domain containing protein 1659 0.0
Os12g0538500 Similar to PGPD14 protein 187 2e-47
Os01g0719100 Similar to PGPD14 protein 172 1e-42
Os10g0456800 Similar to PGPD14 protein 167 3e-41
Os01g0689300 Conserved hypothetical protein 157 4e-38
Os03g0348900 Zinc finger, CHY-type domain containing protein 154 2e-37
Os03g0145900 Zinc finger, CHY-type domain containing protein 133 6e-31
>Os05g0551000 Zinc finger, CHY-type domain containing protein
Length = 811
Score = 1659 bits (4295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 797/811 (98%), Positives = 797/811 (98%)
Query: 1 MEKIERHFKNEETKVLPQARIHFSSEKQRELLYKSLCVIPLKLLERVLPWFVSKLNDQDA 60
MEKIERHFKNEETKVLPQARIHFSSEKQRELLYKSLCVIPLKLLERVLPWFVSKLNDQDA
Sbjct: 1 MEKIERHFKNEETKVLPQARIHFSSEKQRELLYKSLCVIPLKLLERVLPWFVSKLNDQDA 60
Query: 61 EAFLQNMFLAAPSSEAALVTLLSGWACKGRSKGTSNSGKFICLTPRALSSPLDENGFKDC 120
EAFLQNMFLAAPSSEAALVTLLSGWACKGRSKGTSNSGKFICLTPRALSSPLDENGFKDC
Sbjct: 61 EAFLQNMFLAAPSSEAALVTLLSGWACKGRSKGTSNSGKFICLTPRALSSPLDENGFKDC 120
Query: 121 QLCPCSLQSDICSRPAKKWNDTESSNISNCSQTADIALTCKNRPCHIPGLRVEISNLAVN 180
QLCPCSLQSDICSRPAKKWNDTESSNISNCSQTADIALTCKNRPCHIPGLRVEISNLAVN
Sbjct: 121 QLCPCSLQSDICSRPAKKWNDTESSNISNCSQTADIALTCKNRPCHIPGLRVEISNLAVN 180
Query: 181 SFASAESFRSLSLNYSAPSLYSSLFSWETDAAFSGPDNISRPIDTIFKFHKAIRKDLEFL 240
SFASAESFRSLSLNYSAPSLYSSLFSWETDAAFSGPDNISRPIDTIFKFHKAIRKDLEFL
Sbjct: 181 SFASAESFRSLSLNYSAPSLYSSLFSWETDAAFSGPDNISRPIDTIFKFHKAIRKDLEFL 240
Query: 241 DVESRKLIDGDESSLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKETLHNVSHSYTLD 300
DVESRKLIDGDESSLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKETLHNVSHSYTLD
Sbjct: 241 DVESRKLIDGDESSLRQFIGRFRLLWGLYRAHSNAEDEIVFPALESKETLHNVSHSYTLD 300
Query: 301 HKQEEELFKDISTILFELSQLHADLKHPLGGADAVGANHIHPYNRIDWSKKNNELLTKLQ 360
HKQEEELFKDISTILFELSQLHADLKHPLGGADAVGANHIHPYNRIDWSKKNNELLTKLQ
Sbjct: 301 HKQEEELFKDISTILFELSQLHADLKHPLGGADAVGANHIHPYNRIDWSKKNNELLTKLQ 360
Query: 361 GMCKSIRVTLSNHVHREELELWPLFDKHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSA 420
GMCKSIRVTLSNHVHREELELWPLFDKHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSA
Sbjct: 361 GMCKSIRVTLSNHVHREELELWPLFDKHFSVEEQDKIVGRIIGSTGAEVLQSMLPWVTSA 420
Query: 421 LSLDEQNNMLDTWRQVTKNTMFDEWLNEWWKRXXXXXXXXXXXXXXEEDHFQEKFDQSEQ 480
LSLDEQNNMLDTWRQVTKNTMFDEWLNEWWKR EEDHFQEKFDQSEQ
Sbjct: 421 LSLDEQNNMLDTWRQVTKNTMFDEWLNEWWKRSPTSSGPSSDASHPEEDHFQEKFDQSEQ 480
Query: 481 MFKPGWKDIFRMNQSELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKSPQPQSE 540
MFKPGWKDIFRMNQSELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKSPQPQSE
Sbjct: 481 MFKPGWKDIFRMNQSELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIAAQQKSPQPQSE 540
Query: 541 DRNGCTVLPGCCPSYRDPENQIFGCEHYKRKCKLVAACCNKLFTCRFCHDKVSDHTMERK 600
DRNGCTVLPGCCPSYRDPENQIFGCEHYKRKCKLVAACCNKLFTCRFCHDKVSDHTMERK
Sbjct: 541 DRNGCTVLPGCCPSYRDPENQIFGCEHYKRKCKLVAACCNKLFTCRFCHDKVSDHTMERK 600
Query: 601 ATVEMMCMQCLKVQPVGPNCQTPSCNGLSMAKYYCSVCKFFDDERSVYHCPFCNLCRLGQ 660
ATVEMMCMQCLKVQPVGPNCQTPSCNGLSMAKYYCSVCKFFDDERSVYHCPFCNLCRLGQ
Sbjct: 601 ATVEMMCMQCLKVQPVGPNCQTPSCNGLSMAKYYCSVCKFFDDERSVYHCPFCNLCRLGQ 660
Query: 661 GLGIDFFHCMKCNCCLGMKLIEHKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFMHSA 720
GLGIDFFHCMKCNCCLGMKLIEHKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFMHSA
Sbjct: 661 GLGIDFFHCMKCNCCLGMKLIEHKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFMHSA 720
Query: 721 CFQAYTCSHYTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCERKGRS 780
CFQAYTCSHYTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCERKGRS
Sbjct: 721 CFQAYTCSHYTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCERKGRS 780
Query: 781 RFHWLYHKCGFCGSYNTRVIKIDRADCSTSD 811
RFHWLYHKCGFCGSYNTRVIKIDRADCSTSD
Sbjct: 781 RFHWLYHKCGFCGSYNTRVIKIDRADCSTSD 811
>Os12g0538500 Similar to PGPD14 protein
Length = 292
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/251 (41%), Positives = 147/251 (58%), Gaps = 14/251 (5%)
Query: 556 RDPENQIFGCEHYKRKCKLVAACCNKLFTCRFCHDKVSD----HTMERKATVEMMCMQCL 611
RD GCEHY+R+CK+VA CC ++F CR CH+ + HT+ R+ +++C+ C
Sbjct: 24 RDVGKMEHGCEHYRRRCKIVAPCCGEVFACRHCHNDATASGDRHTICRQDVEKVVCLLCD 83
Query: 612 KVQPVGPNCQTPSCNGLSMAKYYCSVCKFFDD--ERSVYHCPFCNLCRLGQGLGIDFFHC 669
QPV C G++M +Y+C VCKF+DD E+ +HC C +CR+G ++FHC
Sbjct: 84 TEQPVSQVCINC---GVNMGEYFCDVCKFYDDDTEKGQFHCYDCGICRVGGKE--NYFHC 138
Query: 670 MKCNCCLGMKLIE-HKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFMHSACF-QAYTC 727
KC C + L + H+C E + NCPIC ++LF S + L CGH MH CF +
Sbjct: 139 AKCGSCYAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRVLDCGHTMHMECFSEMVEH 198
Query: 728 SHYTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCERKGRSRFHWLYH 787
+ YTCPICSK+ DMT ++ +LD + A +P YR + +LCNDC + FH + H
Sbjct: 199 NKYTCPICSKTALDMTHHWALLDQEIEATIMPPVYRYKVW-VLCNDCNKVSEVDFHVIGH 257
Query: 788 KCGFCGSYNTR 798
KC C SYNTR
Sbjct: 258 KCSHCNSYNTR 268
>Os01g0719100 Similar to PGPD14 protein
Length = 302
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 139/252 (55%), Gaps = 22/252 (8%)
Query: 563 FGCEHYKRKCKLVAACCNKLFTCRFCH---------DKVSDHTMERKATVEMMCMQCLKV 613
+GC HY+R+C++ A CCN++F CR CH D V H + R +++C C
Sbjct: 59 YGCAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELPRHEVQQVICSLCGTE 118
Query: 614 QPVGPNCQTPSCNGLSMAKYYCSVCKFFDDE--RSVYHCPFCNLCRLGQGLGIDFFHCMK 671
Q V C SC G+ M KY+C VCK FDD+ + YHC C +CR+G +FFHC K
Sbjct: 119 QEVRQVC--ISC-GVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIGGKE--NFFHCSK 173
Query: 672 CNCCLGMKLIE-HKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFMHSACFQAYTCSH- 729
C CC + L H C E + +CPIC ++LF S+ V LPCGH +H C + H
Sbjct: 174 CGCCYSIVLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKCLREME-EHC 232
Query: 730 -YTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCERKGRSRFHWLYHK 788
+ CP+CSKS+ DM+ + LD LA + + ++ ILCNDC +FH + HK
Sbjct: 233 QFACPLCSKSVCDMSKAWERLDEELAT--ISDTCDNKMVRILCNDCGATSEVQFHLIAHK 290
Query: 789 CGFCGSYNTRVI 800
C C SYNTR I
Sbjct: 291 CQKCKSYNTRQI 302
>Os10g0456800 Similar to PGPD14 protein
Length = 266
Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 136/254 (53%), Gaps = 20/254 (7%)
Query: 559 ENQIFGCEHYKRKCKLVAACCNKLFTCRFCHDKVSD---------HTMERKATVEMMCMQ 609
E++ GCEHY R C++ A CC ++F CR CH++ + H + R +++C
Sbjct: 4 ESEQHGCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVICSL 63
Query: 610 CLKVQPVGPNCQTPSCNGLSMAKYYCSVCKFFDDE--RSVYHCPFCNLCRLGQGLGID-F 666
C K Q V C G M KY+C C FFDD+ ++ YHC C +CR G G+D F
Sbjct: 64 CDKEQDVQQYCSGC---GACMGKYFCEKCNFFDDDVSKNQYHCDGCGICRTG---GVDKF 117
Query: 667 FHCMKCNCCLGMKLIE-HKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFMHSACFQAY 725
FHC KC CC L + H C E + NCP+C ++LF S+ + L CGH +H C
Sbjct: 118 FHCDKCGCCYSNVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHCGHTIHLECLNVM 177
Query: 726 TCSH-YTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCERKGRSRFHW 784
H + CP+CS+S DM+ + LD +AA +PE Y+ + ILCNDC FH
Sbjct: 178 RAHHHFACPVCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCNDCGATSNVNFHV 237
Query: 785 LYHKCGFCGSYNTR 798
L KC C SYNTR
Sbjct: 238 LAQKCPGCSSYNTR 251
>Os01g0689300 Conserved hypothetical protein
Length = 87
Score = 157 bits (396), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 71/80 (88%), Positives = 75/80 (93%)
Query: 645 RSVYHCPFCNLCRLGQGLGIDFFHCMKCNCCLGMKLIEHKCREKMLEMNCPICCDFLFTS 704
R+VYHCPFCNLCRLG+GLG+DFFHCMKCNCCLGMKL EHKCREK LE NCPICCDFLFTS
Sbjct: 7 RTVYHCPFCNLCRLGKGLGVDFFHCMKCNCCLGMKLTEHKCREKGLETNCPICCDFLFTS 66
Query: 705 SAAVKGLPCGHFMHSACFQA 724
SAAV+ LPCGHFMHSACFQ
Sbjct: 67 SAAVRALPCGHFMHSACFQV 86
>Os03g0348900 Zinc finger, CHY-type domain containing protein
Length = 260
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 134/243 (55%), Gaps = 16/243 (6%)
Query: 563 FGCEHYKRKCKLVAACCNKLFTCRFCHDKVS--DHTMERKATVEMMCMQCLKVQPVGPNC 620
FGC+HY+R+C++ A CCN +F CR CH++ + H ++R A ++C+ C QPV C
Sbjct: 16 FGCKHYRRRCRIRAPCCNDVFHCRHCHNESTKDGHELDRHAVESVICLVCDTEQPVAQVC 75
Query: 621 QTPSCNGLSMAKYYCSVCKFFDD--ERSVYHCPFCNLCRLGQGLGID-FFHCMKCNCCLG 677
G+ M +Y+CS CKFFDD +R +HC C +CR+G G D FFHC KC C
Sbjct: 76 YNC---GVCMGEYFCSACKFFDDDVDREHFHCQDCGICRVG---GKDNFFHCEKCGSCYS 129
Query: 678 MKLIE-HKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFMHSACFQAYTCSH--YTCPI 734
+ L + H C E ++ NCPIC ++LF S L CGH MH CF H ++CPI
Sbjct: 130 VSLRDKHCCIENSMKNNCPICYEYLFDSLRETSVLRCGHTMHLQCFHEML-KHDKFSCPI 188
Query: 735 CSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCERKGRSRFHWLYHKCGFCGS 794
CS + DM + LD + A L +Y + I+CNDC + HKC C S
Sbjct: 189 CSMPIFDMDKFLRALDAEIEANMLHIDYMGK-GWIVCNDCRDTTQVYARVAGHKCCHCQS 247
Query: 795 YNT 797
+NT
Sbjct: 248 HNT 250
>Os03g0145900 Zinc finger, CHY-type domain containing protein
Length = 225
Score = 133 bits (334), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 9/202 (4%)
Query: 601 ATVEMMCMQCLKVQPVGPNCQTPSCNGLSMAKYYCSVCKFFDDE--RSVYHCPFCNLCRL 658
++ +++C C K Q V +C G + KY+C+ C F+DD+ ++ +HC C +CR
Sbjct: 16 SSSQVICSLCNKEQDVQQDCSNC---GACLGKYFCAKCNFYDDDVSKNQFHCDGCGICRT 72
Query: 659 GQGLGIDFFHCMKCNCCLGMKLIE-HKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFM 717
G +FFHC KC CC L + H C E+ + NCP+C ++LF S+ + L CGH +
Sbjct: 73 GGAE--NFFHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKDISALHCGHTI 130
Query: 718 HSAC-FQAYTCSHYTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCER 776
H C ++ + ++CP+C +S DM+ + LD +AA +P Y+ + ILCNDC
Sbjct: 131 HLECLYEMRSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKMIWILCNDCGT 190
Query: 777 KGRSRFHWLYHKCGFCGSYNTR 798
+FH L HKC C SYNTR
Sbjct: 191 TSNVQFHILGHKCPGCSSYNTR 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,774,126
Number of extensions: 1158124
Number of successful extensions: 2707
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 2673
Number of HSP's successfully gapped: 7
Length of query: 811
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 702
Effective length of database: 11,344,475
Effective search space: 7963821450
Effective search space used: 7963821450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)