Os01g0719100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PGPD14 protein.
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Os01g0719100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PGPD14 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.24 | 0.513 | 12.3 | -0.745 | 0.974 | 0.779 | 0.528 | 1.57 | 0.109 | 12 | 21.8 | 1058 | -- | -- |
| 125.31 | 0.521 | 12.3 | -1.03 | 1 | 0.632 | 0.0562 | -- | 0.00861 | 11.8 | 22.2 | 835 | -- | -- |
| 120.36 | 0.511 | 12.3 | -0.766 | 0.977 | 0.783 | -- | 1.42 | 0.0929 | 12 | 21.8 | 1057 | -- | -- |
| 125.01 | 0.521 | 12.3 | -1.12 | 0.98 | 0.661 | -- | -- | -0.000406 | 11.8 | 22.2 | 819 | -- | -- |
| 164.98 | 0.601 | 12.3 | -0.886 | -- | 0.602 | -- | 0.84 | 0.11 | -- | 21.8 | 1057 | -- | -- |
| 144.13 | 0.563 | 12.3 | -0.924 | 0.863 | -- | 0.206 | -- | 0.228 | 12 | -- | -- | -- | -- |
| 144.31 | 0.563 | 12.3 | -0.916 | 0.862 | -- | -- | -- | 0.229 | 12 | -- | -- | -- | -- |
| 167.24 | 0.605 | 12.3 | -1.12 | -- | 0.604 | -- | -- | 0.0414 | -- | 22.2 | 819 | -- | -- |
| 157.65 | 0.585 | 12.3 | -- | 0.899 | 0.498 | -- | -- | 0.0892 | 12 | 22.3 | 851 | -- | -- |
| 191.11 | 0.646 | 12.3 | -0.943 | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
| 166.41 | 0.603 | 12.3 | -- | 0.874 | -- | -- | -- | 0.331 | 12.1 | -- | -- | -- | -- |
| 189.63 | 0.641 | 12.3 | -- | -- | 0.534 | -- | -- | 0.0666 | -- | 24.9 | 33 | -- | -- |
| 214.55 | 0.684 | 12.3 | -- | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.71 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 4 | 113.54 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 19 |
| 5 | 113.78 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 17 | 20 |
| 11 | 114.80 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 14 | 115.33 | temperature | 30.0 | 10 | < th | dose dependent | sin | 5 | NA |
| 17 | 115.41 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 17 |
| 19 | 115.53 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 18 | 19 |
| 26 | 115.81 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 34 | 116.06 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 43 | 116.55 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 20 |
| 48 | 116.65 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 99 | 117.68 | temperature | 10.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 126 | 118.25 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 127 | 118.26 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 14 |
| 152 | 118.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 18 |
| 212 | 119.24 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 216 | 119.28 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 16 |
| 218 | 119.30 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 248 | 119.62 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 18 |
| 270 | 119.79 | temperature | 30.0 | 10 | < th | dose dependent | no | NA | NA |
| 320 | 120.24 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 326 | 120.30 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 377 | 120.80 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 385 | 120.86 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 8 |
| 400 | 120.96 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 403 | 120.99 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 411 | 121.02 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 457 | 121.30 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 512 | 121.71 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 513 | 121.73 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 20 |
| 529 | 121.83 | temperature | 25.0 | 90 | < th | dose independent | rect. | 23 | 18 |
| 541 | 121.88 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 20 |
| 542 | 121.88 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 544 | 121.89 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 4 |
| 547 | 121.91 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 549 | 121.92 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 553 | 121.93 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 559 | 121.95 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 676 | 122.57 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 697 | 122.67 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 19 |
| 721 | 122.74 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 734 | 122.80 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 791 | 123.08 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 820 | 123.18 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 835 | 123.24 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 848 | 123.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 912 | 123.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 939 | 123.64 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 940 | 123.64 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 9 |
| 941 | 123.64 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |