BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0719100 Os01g0719100|AK062155
(302 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0719100 Similar to PGPD14 protein 618 e-177
Os10g0456800 Similar to PGPD14 protein 352 2e-97
Os12g0538500 Similar to PGPD14 protein 295 3e-80
Os03g0145900 Zinc finger, CHY-type domain containing protein 277 7e-75
Os03g0348900 Zinc finger, CHY-type domain containing protein 275 2e-74
Os05g0551000 Zinc finger, CHY-type domain containing protein 172 3e-43
Os01g0689300 Conserved hypothetical protein 69 6e-12
>Os01g0719100 Similar to PGPD14 protein
Length = 302
Score = 618 bits (1594), Expect = e-177, Method: Compositional matrix adjust.
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MGAMDVQLESTAVQHGQAKINVEEHALVSLLSDEKYATEKTEDVDPDDYEKLEEGIMQYG 60
MGAMDVQLESTAVQHGQAKINVEEHALVSLLSDEKYATEKTEDVDPDDYEKLEEGIMQYG
Sbjct: 1 MGAMDVQLESTAVQHGQAKINVEEHALVSLLSDEKYATEKTEDVDPDDYEKLEEGIMQYG 60
Query: 61 CAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELPRHEVQQVICSLCGTEQE 120
CAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELPRHEVQQVICSLCGTEQE
Sbjct: 61 CAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELPRHEVQQVICSLCGTEQE 120
Query: 121 VRQVCISCGVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIGGKENFFHCSKCGCCYSI 180
VRQVCISCGVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIGGKENFFHCSKCGCCYSI
Sbjct: 121 VRQVCISCGVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIGGKENFFHCSKCGCCYSI 180
Query: 181 VLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKCLREMEEHCQFACPLCS 240
VLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKCLREMEEHCQFACPLCS
Sbjct: 181 VLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKCLREMEEHCQFACPLCS 240
Query: 241 KSVCDMSKAWERLDEELATISDTCDNKMVRILCNDCGATSEVQFHLIAHKCQKCKSYNTR 300
KSVCDMSKAWERLDEELATISDTCDNKMVRILCNDCGATSEVQFHLIAHKCQKCKSYNTR
Sbjct: 241 KSVCDMSKAWERLDEELATISDTCDNKMVRILCNDCGATSEVQFHLIAHKCQKCKSYNTR 300
Query: 301 QI 302
QI
Sbjct: 301 QI 302
>Os10g0456800 Similar to PGPD14 protein
Length = 266
Score = 352 bits (902), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 164/247 (66%), Positives = 195/247 (78%), Gaps = 2/247 (0%)
Query: 58 QYGCAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELPRHEVQQVICSLCGT 117
Q+GC HY R CRIRAPCC E+F CRHCHNE KNS++I RHE+PRHE+++VICSLC
Sbjct: 7 QHGCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVICSLCDK 66
Query: 118 EQEVRQVCISCGVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIGGKENFFHCSKCGCC 177
EQ+V+Q C CG CMGKYFCE C FDDDVSK QYHC+GCGICR GG + FFHC KCGCC
Sbjct: 67 EQDVQQYCSGCGACMGKYFCEKCNFFDDDVSKNQYHCDGCGICRTGGVDKFFHCDKCGCC 126
Query: 178 YSIVLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKCLREMEEHCQFACP 237
YS VL++SH CVEGAMHH+CP+CFEYLF+ST D+SVL CGHTIH++CL M H FACP
Sbjct: 127 YSNVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHCGHTIHLECLNVMRAHHHFACP 186
Query: 238 LCSKSVCDMSKAWERLDEELAT--ISDTCDNKMVRILCNDCGATSEVQFHLIAHKCQKCK 295
+CS+S CDMS AW++LDEE+A + + KM+ ILCNDCGATS V FH++A KC C
Sbjct: 187 VCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCNDCGATSNVNFHVLAQKCPGCS 246
Query: 296 SYNTRQI 302
SYNTR+
Sbjct: 247 SYNTRET 253
>Os12g0538500 Similar to PGPD14 protein
Length = 292
Score = 295 bits (755), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 138/248 (55%), Positives = 177/248 (71%), Gaps = 6/248 (2%)
Query: 55 GIMQYGCAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELPRHEVQQVICSL 114
G M++GC HYRRRC+I APCC E+F CRHCHN+ S RH + R +V++V+C L
Sbjct: 27 GKMEHGCEHYRRRCKIVAPCCGEVFACRHCHNDATAS-----GDRHTICRQDVEKVVCLL 81
Query: 115 CGTEQEVRQVCISCGVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIGGKENFFHCSKC 174
C TEQ V QVCI+CGV MG+YFC+VCK +DDD K Q+HC CGICR+GGKEN+FHC+KC
Sbjct: 82 CDTEQPVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFHCYDCGICRVGGKENYFHCAKC 141
Query: 175 GCCYSIVLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKCLREMEEHCQF 234
G CY++ L+++H CVE +M +CPIC+EYLF+S VL CGHT+H++C EM EH ++
Sbjct: 142 GSCYAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRVLDCGHTMHMECFSEMVEHNKY 201
Query: 235 ACPLCSKSVCDMSKAWERLDEEL-ATISDTCDNKMVRILCNDCGATSEVQFHLIAHKCQK 293
CP+CSK+ DM+ W LD+E+ ATI V +LCNDC SEV FH+I HKC
Sbjct: 202 TCPICSKTALDMTHHWALLDQEIEATIMPPVYRYKVWVLCNDCNKVSEVDFHVIGHKCSH 261
Query: 294 CKSYNTRQ 301
C SYNTR
Sbjct: 262 CNSYNTRS 269
>Os03g0145900 Zinc finger, CHY-type domain containing protein
Length = 225
Score = 277 bits (708), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 153/195 (78%), Gaps = 2/195 (1%)
Query: 109 QVICSLCGTEQEVRQVCISCGVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIGGKENF 168
QVICSLC EQ+V+Q C +CG C+GKYFC C +DDDVSK Q+HC+GCGICR GG ENF
Sbjct: 19 QVICSLCNKEQDVQQDCSNCGACLGKYFCAKCNFYDDDVSKNQFHCDGCGICRTGGAENF 78
Query: 169 FHCSKCGCCYSIVLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKCLREM 228
FHC KCGCCYS VLK+SH CVE AMHH+CP+CFEYLF+ST D+S L CGHTIH++CL EM
Sbjct: 79 FHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKDISALHCGHTIHLECLYEM 138
Query: 229 EEHCQFACPLCSKSVCDMSKAWERLDEELAT--ISDTCDNKMVRILCNDCGATSEVQFHL 286
H QF+CP+C +S CDMS AW++LD+E+A + KM+ ILCNDCG TS VQFH+
Sbjct: 139 RSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKMIWILCNDCGTTSNVQFHI 198
Query: 287 IAHKCQKCKSYNTRQ 301
+ HKC C SYNTRQ
Sbjct: 199 LGHKCPGCSSYNTRQ 213
>Os03g0348900 Zinc finger, CHY-type domain containing protein
Length = 260
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 134/257 (52%), Positives = 176/257 (68%), Gaps = 8/257 (3%)
Query: 44 VDPDDYEKLEEGIMQYGCAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELP 103
++ DD + G M +GC HYRRRCRIRAPCCN++F CRHCHNE+ HEL
Sbjct: 1 MELDDASRHGFGRMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNESTKD-------GHELD 53
Query: 104 RHEVQQVICSLCGTEQEVRQVCISCGVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIG 163
RH V+ VIC +C TEQ V QVC +CGVCMG+YFC CK FDDDV ++ +HC CGICR+G
Sbjct: 54 RHAVESVICLVCDTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVDREHFHCQDCGICRVG 113
Query: 164 GKENFFHCSKCGCCYSIVLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVK 223
GK+NFFHC KCG CYS+ L++ H C+E +M ++CPIC+EYLF+S + SVL CGHT+H++
Sbjct: 114 GKDNFFHCEKCGSCYSVSLRDKHCCIENSMKNNCPICYEYLFDSLRETSVLRCGHTMHLQ 173
Query: 224 CLREMEEHCQFACPLCSKSVCDMSKAWERLDEEL-ATISDTCDNKMVRILCNDCGATSEV 282
C EM +H +F+CP+CS + DM K LD E+ A + I+CNDC T++V
Sbjct: 174 CFHEMLKHDKFSCPICSMPIFDMDKFLRALDAEIEANMLHIDYMGKGWIVCNDCRDTTQV 233
Query: 283 QFHLIAHKCQKCKSYNT 299
+ HKC C+S+NT
Sbjct: 234 YARVAGHKCCHCQSHNT 250
>Os05g0551000 Zinc finger, CHY-type domain containing protein
Length = 811
Score = 172 bits (436), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 139/252 (55%), Gaps = 22/252 (8%)
Query: 59 YGCAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELPRHEVQQVICSLCGTE 118
+GC HY+R+C++ A CCN++F CR CH D V H + R +++C C
Sbjct: 563 FGCEHYKRKCKLVAACCNKLFTCRFCH---------DKVSDHTMERKATVEMMCMQCLKV 613
Query: 119 QEVRQVC--ISC-GVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIGGKE--NFFHCSK 173
Q V C SC G+ M KY+C VCK FDD+ + YHC C +CR+G +FFHC K
Sbjct: 614 QPVGPNCQTPSCNGLSMAKYYCSVCKFFDDE--RSVYHCPFCNLCRLGQGLGIDFFHCMK 671
Query: 174 CGCCYSIVLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKCLREME-EHC 232
C CC + L H C E + +CPIC ++LF S+ V LPCGH +H C + H
Sbjct: 672 CNCCLGMKLIE-HKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFMHSACFQAYTCSH- 729
Query: 233 QFACPLCSKSVCDMSKAWERLDEELAT--ISDTCDNKMVRILCNDCGATSEVQFHLIAHK 290
+ CP+CSKS+ DM+ + LD LA + + ++ ILCNDC +FH + HK
Sbjct: 730 -YTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCERKGRSRFHWLYHK 788
Query: 291 CQKCKSYNTRQI 302
C C SYNTR I
Sbjct: 789 CGFCGSYNTRVI 800
>Os01g0689300 Conserved hypothetical protein
Length = 87
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 145 DDVSKQQYHCNGCGICRIGGKE--NFFHCSKCGCCYSIVLKNSHACVEGAMHHDCPICFE 202
D + YHC C +CR+G +FFHC KC CC + L H C E + +CPIC +
Sbjct: 3 DFFFRTVYHCPFCNLCRLGKGLGVDFFHCMKCNCCLGMKL-TEHKCREKGLETNCPICCD 61
Query: 203 YLFESTNDVSVLPCGHTIHVKCLR 226
+LF S+ V LPCGH +H C +
Sbjct: 62 FLFTSSAAVRALPCGHFMHSACFQ 85
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.136 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,978,824
Number of extensions: 473203
Number of successful extensions: 1976
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1950
Number of HSP's successfully gapped: 7
Length of query: 302
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 202
Effective length of database: 11,814,401
Effective search space: 2386509002
Effective search space used: 2386509002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)