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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0145900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CHY-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.06 (0.0418) R2 : 0.877
β1 : -1.73 (0.156) R2dD : 0.0365 R2D : 0.0547
β2 : 7.46 (0.184) R2dC : 1.32 R2C : 0.717
β3 : 3.17 (0.269) R2dE : 0.115 R2E : -0.491
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.135 (0.0962) R2dN8 : 0.000625 R2N8 : -0.00606
σ : 0.774
deviance : 275.96
__
_____
C
peak time of C : 17
E
wheather : temperature
threshold : 29.6
memory length : 28
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 0.911
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
271.21 0.774 7.1 -2.01 7.49 3.19 2.53 2.86 0.034 17 29.61 29 0.875 --
276.58 0.781 7.06 -1.75 7.45 3.37 0.337 -- 0.107 16.9 29.61 29 0.875 --
276.48 0.78 7.07 -1.79 7.45 3.38 -- 0.467 0.099 16.9 29.61 29 0.875 --
275.96 0.774 7.06 -1.73 7.46 3.17 -- -- 0.135 17 29.6 28 0.911 --
1320.29 1.7 7.23 -2.95 -- -5.97 -- -0.0432 -1.18 -- 29.61 29 0.875 --
351.57 0.879 7.15 -2.16 5.76 -- 0.557 -- -0.336 17.2 -- -- -- --
352.35 0.879 7.15 -2.16 5.76 -- -- -- -0.333 17.2 -- -- -- --
381.9 0.914 7.06 -2.23 -- -5.88 -- -- -0.405 -- 158.2 4 0.582 --
349.77 0.871 7.01 -- 7.94 3.82 -- -- 0.408 16.9 29.57 50 1.04 --
2088.21 2.14 7.08 -2.36 -- -- -- -- -0.478 -- -- -- -- --
475.15 1.02 7.09 -- 5.8 -- -- -- -0.0928 17.2 -- -- -- --
480.77 1.02 7.02 -- -- -5.84 -- -- -0.192 -- 953.7 69 1.38 --
2235.18 2.21 7.02 -- -- -- -- -- -0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 265.61 radiation 1.0 43200 < th dose dependent rect. 20 5
4 270.04 temperature 30.0 270 < th dose dependent rect. 22 11
5 270.85 temperature 15.0 270 > th dose dependent rect. 18 15
8 271.42 temperature 30.0 30 < th dose dependent sin 7 NA
9 271.76 temperature 20.0 270 > th dose dependent rect. 18 17
11 272.13 temperature 15.0 30 > th dose dependent sin 7 NA
21 273.16 temperature 10.0 270 > th dose dependent sin 9 NA
28 273.68 temperature 30.0 270 < th dose dependent sin 9 NA
61 276.78 temperature 20.0 720 > th dose dependent rect. 18 12
77 278.20 temperature 10.0 720 > th dose dependent rect. 19 10
80 278.37 temperature 30.0 720 < th dose dependent rect. 17 10
117 280.13 temperature 15.0 270 > th dose dependent rect. 17 20
131 280.57 wind 5.0 14400 > th dose independent rect. 20 2
139 280.91 wind 5.0 14400 < th dose independent rect. 20 1
171 281.85 temperature 20.0 270 > th dose independent rect. 17 18
182 282.46 temperature 25.0 10 < th dose dependent rect. 24 11
184 282.53 temperature 30.0 720 < th dose dependent sin 14 NA
186 282.64 temperature 20.0 270 > th dose independent rect. 17 20
189 282.70 temperature 20.0 720 > th dose dependent sin 12 NA
226 283.69 temperature 25.0 90 < th dose dependent rect. 23 14
231 283.84 wind 5.0 14400 > th dose dependent rect. 20 2
249 284.27 precipitation 0.1 4320 > th dose dependent rect. 8 10
250 284.28 wind 9.0 14400 < th dose independent rect. 20 8
255 284.46 temperature 10.0 720 > th dose dependent sin 13 NA
258 284.54 precipitation 0.1 4320 > th dose dependent rect. 6 12
263 284.62 wind 9.0 14400 < th dose independent rect. 20 6
267 284.68 temperature 25.0 90 < th dose dependent rect. 23 16
280 284.94 wind 9.0 14400 < th dose independent rect. 20 3
302 285.37 wind 9.0 14400 > th dose dependent rect. 20 15
353 286.42 wind 9.0 14400 > th dose independent rect. 20 9
389 287.07 wind 7.0 14400 > th dose dependent rect. 20 8
397 287.16 wind 5.0 14400 > th dose dependent rect. 20 5
445 287.89 wind 9.0 14400 < th dose independent rect. 20 14
452 287.95 wind 9.0 14400 > th dose independent rect. 20 4
459 288.00 wind 9.0 14400 > th dose independent rect. 20 6
466 288.08 wind 9.0 14400 > th dose independent rect. 20 2
482 288.23 temperature 20.0 720 > th dose dependent rect. 19 2
512 288.64 precipitation 0.1 4320 > th dose independent rect. 13 5
525 288.80 wind 9.0 14400 > th dose independent rect. 20 14
546 289.01 precipitation 0.1 4320 < th dose independent rect. 11 7
547 289.01 precipitation 0.1 4320 < th dose dependent rect. 11 7
549 289.04 temperature 25.0 720 > th dose independent rect. 19 2
592 289.37 wind 5.0 14400 > th dose independent rect. 19 20
637 289.66 precipitation 0.1 4320 > th dose independent rect. 16 2
701 290.32 atmosphere 1000.0 14400 > th dose independent rect. 4 1
706 290.34 precipitation 0.1 4320 < th dose independent rect. 16 2
707 290.34 precipitation 0.1 4320 < th dose dependent rect. 16 2
715 290.38 wind 5.0 14400 < th dose independent rect. 19 20
727 290.47 temperature 20.0 270 > th dose independent rect. 2 23
778 290.89 atmosphere 1000.0 14400 > th dose independent rect. 16 1
779 290.90 atmosphere 1000.0 14400 < th dose independent rect. 4 1
811 291.15 atmosphere 1000.0 14400 > th dose independent rect. 3 5
830 291.26 atmosphere 1000.0 14400 < th dose independent rect. 2 6
831 291.26 atmosphere 1000.0 14400 > th dose independent rect. 2 9
840 291.30 temperature 30.0 1440 < th dose dependent rect. 18 1
849 291.33 atmosphere 1000.0 14400 < th dose independent rect. 2 9
861 291.37 atmosphere 1000.0 14400 > th dose independent rect. 7 1
867 291.39 atmosphere 1000.0 14400 < th dose independent rect. 7 1
877 291.42 atmosphere 1005.0 14400 < th dose dependent rect. 7 1
887 291.46 atmosphere 1000.0 14400 > th dose independent rect. 2 15
904 291.54 atmosphere 1000.0 14400 > th dose independent rect. 2 18
915 291.59 wind 7.0 43200 > th dose dependent rect. 17 4
921 291.61 atmosphere 1000.0 14400 < th dose independent rect. 2 15
941 291.67 atmosphere 1005.0 14400 < th dose dependent rect. 7 4
944 291.68 atmosphere 1000.0 14400 < th dose independent rect. 2 18
948 291.69 atmosphere 1000.0 14400 < th dose independent rect. 6 5
955 291.70 atmosphere 1000.0 14400 > th dose independent rect. 6 5
970 291.73 atmosphere 1000.0 14400 > th dose independent sin 2 NA
997 291.76 atmosphere 1000.0 14400 > th dose independent rect. 6 11