BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0145900 Os03g0145900|AK120297
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0145900 Zinc finger, CHY-type domain containing protein 467 e-132
Os10g0456800 Similar to PGPD14 protein 354 3e-98
Os01g0719100 Similar to PGPD14 protein 277 5e-75
Os12g0538500 Similar to PGPD14 protein 250 5e-67
Os03g0348900 Zinc finger, CHY-type domain containing protein 219 2e-57
Os05g0551000 Zinc finger, CHY-type domain containing protein 133 1e-31
Os01g0689300 Conserved hypothetical protein 65 5e-11
>Os03g0145900 Zinc finger, CHY-type domain containing protein
Length = 225
Score = 467 bits (1201), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 DTTKPYSDLIETVLPSSSQVICSLCNKEQDVQQDCSNCGACLGKYFCAKCNFYDDDVSKN 60
DTTKPYSDLIETVLPSSSQVICSLCNKEQDVQQDCSNCGACLGKYFCAKCNFYDDDVSKN
Sbjct: 1 DTTKPYSDLIETVLPSSSQVICSLCNKEQDVQQDCSNCGACLGKYFCAKCNFYDDDVSKN 60
Query: 61 QFHCDGCGICRTGGAENFFHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKD 120
QFHCDGCGICRTGGAENFFHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKD
Sbjct: 61 QFHCDGCGICRTGGAENFFHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKD 120
Query: 121 ISALHCGHTIHLECLYEMRSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKM 180
ISALHCGHTIHLECLYEMRSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKM
Sbjct: 121 ISALHCGHTIHLECLYEMRSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKM 180
Query: 181 IWILCNDCGTTSNVQFHILGHKCPGCSSYNTRQTRAAPAAACSRV 225
IWILCNDCGTTSNVQFHILGHKCPGCSSYNTRQTRAAPAAACSRV
Sbjct: 181 IWILCNDCGTTSNVQFHILGHKCPGCSSYNTRQTRAAPAAACSRV 225
>Os10g0456800 Similar to PGPD14 protein
Length = 266
Score = 354 bits (909), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 171/221 (77%), Positives = 186/221 (84%), Gaps = 2/221 (0%)
Query: 7 SDLIETVLPSSSQVICSLCNKEQDVQQDCSNCGACLGKYFCAKCNFYDDDVSKNQFHCDG 66
+D E +VICSLC+KEQDVQQ CS CGAC+GKYFC KCNF+DDDVSKNQ+HCDG
Sbjct: 46 NDRHEIPRHEIKKVICSLCDKEQDVQQYCSGCGACMGKYFCEKCNFFDDDVSKNQYHCDG 105
Query: 67 CGICRTGGAENFFHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKDISALHC 126
CGICRTGG + FFHCDKCGCCYS VL+DSHHCVE AMHHNCPVCFEYLFDSTKDIS LHC
Sbjct: 106 CGICRTGGVDKFFHCDKCGCCYSNVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHC 165
Query: 127 GHTIHLECLYEMRSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKMIWILCN 186
GHTIHLECL MR+H F+CPVC RSACDMS AW+KLD+EVAA+PMP YQKKMIWILCN
Sbjct: 166 GHTIHLECLNVMRAHHHFACPVCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCN 225
Query: 187 DCGTTSNVQFHILGHKCPGCSSYNTRQTR--AAPAAACSRV 225
DCG TSNV FH+L KCPGCSSYNTR+TR PAAA S V
Sbjct: 226 DCGATSNVNFHVLAQKCPGCSSYNTRETRGCGRPAAARSTV 266
>Os01g0719100 Similar to PGPD14 protein
Length = 302
Score = 277 bits (708), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 153/195 (78%), Gaps = 2/195 (1%)
Query: 19 QVICSLCNKEQDVQQDCSNCGACLGKYFCAKCNFYDDDVSKNQFHCDGCGICRTGGAENF 78
QVICSLC EQ+V+Q C +CG C+GKYFC C +DDDVSK Q+HC+GCGICR GG ENF
Sbjct: 109 QVICSLCGTEQEVRQVCISCGVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIGGKENF 168
Query: 79 FHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKDISALHCGHTIHLECLYEM 138
FHC KCGCCYS VLK+SH CVE AMHH+CP+CFEYLF+ST D+S L CGHTIH++CL EM
Sbjct: 169 FHCSKCGCCYSIVLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKCLREM 228
Query: 139 RSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKMIWILCNDCGTTSNVQFHI 198
H QF+CP+C +S CDMS AW++LD+E+A + KM+ ILCNDCG TS VQFH+
Sbjct: 229 EEHCQFACPLCSKSVCDMSKAWERLDEELAT--ISDTCDNKMVRILCNDCGATSEVQFHL 286
Query: 199 LGHKCPGCSSYNTRQ 213
+ HKC C SYNTRQ
Sbjct: 287 IAHKCQKCKSYNTRQ 301
>Os12g0538500 Similar to PGPD14 protein
Length = 292
Score = 250 bits (639), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 113/202 (55%), Positives = 144/202 (71%), Gaps = 2/202 (0%)
Query: 18 SQVICSLCNKEQDVQQDCSNCGACLGKYFCAKCNFYDDDVSKNQFHCDGCGICRTGGAEN 77
+V+C LC+ EQ V Q C NCG +G+YFC C FYDDD K QFHC CGICR GG EN
Sbjct: 75 EKVVCLLCDTEQPVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFHCYDCGICRVGGKEN 134
Query: 78 FFHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKDISALHCGHTIHLECLYE 137
+FHC KCG CY+ L+D+H CVE +M NCP+C+EYLFDS K L CGHT+H+EC E
Sbjct: 135 YFHCAKCGSCYAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRVLDCGHTMHMECFSE 194
Query: 138 MRSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKMIWILCNDCGTTSNVQFH 197
M H +++CP+C ++A DM+H W LDQE+ A+ MP +Y+ K +W+LCNDC S V FH
Sbjct: 195 MVEHNKYTCPICSKTALDMTHHWALLDQEIEATIMPPVYRYK-VWVLCNDCNKVSEVDFH 253
Query: 198 ILGHKCPGCSSYNTRQTRAAPA 219
++GHKC C+SYNTR T + PA
Sbjct: 254 VIGHKCSHCNSYNTRST-SRPA 274
>Os03g0348900 Zinc finger, CHY-type domain containing protein
Length = 260
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 144/219 (65%), Gaps = 5/219 (2%)
Query: 1 DTTKPYSDLIETVLPSSSQVICSLCNKEQDVQQDCSNCGACLGKYFCAKCNFYDDDVSKN 60
++TK +L + S VIC +C+ EQ V Q C NCG C+G+YFC+ C F+DDDV +
Sbjct: 44 ESTKDGHELDRHAVES---VICLVCDTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVDRE 100
Query: 61 QFHCDGCGICRTGGAENFFHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKD 120
FHC CGICR GG +NFFHC+KCG CYS L+D H C+E +M +NCP+C+EYLFDS ++
Sbjct: 101 HFHCQDCGICRVGGKDNFFHCEKCGSCYSVSLRDKHCCIENSMKNNCPICYEYLFDSLRE 160
Query: 121 ISALHCGHTIHLECLYEMRSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKM 180
S L CGHT+HL+C +EM H +FSCP+C DM + LD E+ A+ + + Y K
Sbjct: 161 TSVLRCGHTMHLQCFHEMLKHDKFSCPICSMPIFDMDKFLRALDAEIEANMLHIDYMGKG 220
Query: 181 IWILCNDCGTTSNVQFHILGHKCPGCSSYNTRQTRAAPA 219
WI+CNDC T+ V + GHKC C S+NT + AAP
Sbjct: 221 -WIVCNDCRDTTQVYARVAGHKCCHCQSHNTCRV-AAPV 257
>Os05g0551000 Zinc finger, CHY-type domain containing protein
Length = 811
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 9/202 (4%)
Query: 16 SSSQVICSLCNKEQDVQQDCSNC---GACLGKYFCAKCNFYDDDVSKNQFHCDGCGICRT 72
++ +++C C K Q V +C G + KY+C+ C F+DD+ ++ +HC C +CR
Sbjct: 601 ATVEMMCMQCLKVQPVGPNCQTPSCNGLSMAKYYCSVCKFFDDE--RSVYHCPFCNLCRL 658
Query: 73 GGAE--NFFHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKDISALHCGHTI 130
G +FFHC KC CC L + H C E+ + NCP+C ++LF S+ + L CGH +
Sbjct: 659 GQGLGIDFFHCMKCNCCLGMKLIE-HKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFM 717
Query: 131 HLECLYEMRSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKMIWILCNDCGT 190
H C ++ + ++CP+C +S DM+ + LD +AA +P Y+ + ILCNDC
Sbjct: 718 HSAC-FQAYTCSHYTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCER 776
Query: 191 TSNVQFHILGHKCPGCSSYNTR 212
+FH L HKC C SYNTR
Sbjct: 777 KGRSRFHWLYHKCGFCGSYNTR 798
>Os01g0689300 Conserved hypothetical protein
Length = 87
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 55 DDVSKNQFHCDGCGICRTGGA--ENFFHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFE 112
D + +HC C +CR G +FFHC KC CC L + H C E+ + NCP+C +
Sbjct: 3 DFFFRTVYHCPFCNLCRLGKGLGVDFFHCMKCNCCLGMKLTE-HKCREKGLETNCPICCD 61
Query: 113 YLFDSTKDISALHCGHTIHLECL 135
+LF S+ + AL CGH +H C
Sbjct: 62 FLFTSSAAVRALPCGHFMHSACF 84
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.136 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,920,644
Number of extensions: 377205
Number of successful extensions: 1473
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1448
Number of HSP's successfully gapped: 7
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)