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Os10g0456800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PGPD14 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.18 (0.0393) R2 : 0.396
β1 : -0.741 (0.144) R2dD : 0.0372 R2D : 0.0329
β2 : 1.31 (0.111) R2dC : 0.25 R2C : 0.00107
β3 : 1.74 (0.162) R2dE : 0.204 R2E : -0.0652
β4 : -2.96 (0.38) R2dD*C : 0.0811 R2D*C : 0.0491
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.581 (0.0842) R2dN8 : 0.0839 R2N8 : 0.0714
σ : 0.734
deviance : 248.69
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C
peak time of C : 2.08
E
wheather : humidity
threshold : 59.01
memory length : 6
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.98
open length of G : 10.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
248.24 0.74 6.17 -0.731 1.31 1.73 -3.19 -0.515 0.579 2.12 59.07 7 9.97 10
248.69 0.734 6.18 -0.741 1.31 1.74 -2.96 -- 0.581 2.08 59.01 6 9.98 10.1
274.08 0.771 6.17 -0.812 1.35 1.62 -- 1.84 0.569 1.92 52.58 5 9.98 10.4
280.6 0.78 6.17 -0.655 1.22 1.58 -- -- 0.584 1.58 60.84 4 9.98 10
341.1 0.86 6.16 -0.595 -- 1.19 -- 1.09 0.57 -- 71.23 9 9.97 10.9
305.46 0.819 6.2 -0.811 0.785 -- -2.44 -- 0.502 0.794 -- -- -- --
327.78 0.848 6.19 -0.715 0.817 -- -- -- 0.519 23.7 -- -- -- --
341.54 0.861 6.16 -0.648 -- 1.15 -- -- 0.586 -- 71.09 3 10 10.6
292.26 0.796 6.16 -- 1.19 1.55 -- -- 0.648 1.54 60.89 4 9.97 10.2
369.77 0.899 6.18 -0.692 -- -- -- -- 0.529 -- -- -- -- --
341.27 0.864 6.18 -- 0.809 -- -- -- 0.599 23.6 -- -- -- --
351.89 0.874 6.14 -- -- 1.26 -- -- 0.686 -- 72.17 2 10 10.8
382.41 0.913 6.16 -- -- -- -- -- 0.606 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 252.58 humidity 60.0 10 > th dose dependent rect. 10 10
2 254.44 humidity 60.0 10 > th dose dependent rect. 8 12
16 258.07 radiation 20.0 30 < th dose dependent rect. 8 12
28 260.13 radiation 10.0 10 < th dose dependent rect. 23 23
40 261.58 radiation 10.0 10 < th dose dependent rect. 21 23
41 261.60 radiation 1.0 10 < th dose dependent sin 0 NA
44 261.72 humidity 80.0 10 > th dose independent rect. 8 12
51 262.26 radiation 20.0 10 < th dose dependent rect. 6 23
63 263.18 radiation 1.0 30 < th dose independent rect. 6 14
73 263.40 radiation 1.0 10 < th dose dependent rect. 3 17
91 264.06 radiation 1.0 10 < th dose dependent rect. 1 19
95 264.27 temperature 10.0 10 > th dose dependent rect. 20 22
104 264.69 radiation 1.0 30 < th dose dependent rect. 11 9
112 264.89 radiation 1.0 10 < th dose independent rect. 23 23
118 265.23 radiation 1.0 30 < th dose dependent rect. 13 7
123 265.32 radiation 1.0 10 < th dose independent rect. 3 17
124 265.33 radiation 1.0 10 < th dose independent rect. 1 19
134 265.71 radiation 1.0 30 < th dose independent rect. 11 9
143 265.94 radiation 10.0 10 < th dose dependent rect. 1 23
145 266.00 radiation 1.0 30 < th dose independent rect. 21 23
153 266.16 radiation 1.0 30 < th dose dependent rect. 23 21
157 266.24 radiation 1.0 30 < th dose independent rect. 13 7
170 266.57 radiation 1.0 10 < th dose independent sin 0 NA
182 266.84 radiation 1.0 720 > th dose independent rect. 9 7
203 267.30 radiation 1.0 30 < th dose independent rect. 23 21
211 267.47 radiation 20.0 10 < th dose dependent rect. 8 21
222 267.57 radiation 1.0 30 < th dose dependent rect. 15 5
231 267.69 radiation 20.0 10 < th dose dependent rect. 13 23
236 267.79 radiation 20.0 10 < th dose dependent no NA NA
241 267.93 radiation 20.0 10 < th dose dependent rect. 15 23
258 268.16 radiation 10.0 10 < th dose dependent rect. 9 23
262 268.23 wind 7.0 720 < th dose independent rect. 23 20
268 268.27 radiation 20.0 10 < th dose dependent rect. 11 23
282 268.54 radiation 1.0 30 < th dose independent rect. 15 5
286 268.58 humidity 90.0 10 < th dose dependent rect. 20 22
292 268.65 humidity 90.0 10 < th dose dependent rect. 5 13
308 268.91 humidity 80.0 720 < th dose independent rect. 11 3
309 268.91 humidity 50.0 10 > th dose dependent rect. 18 2
312 268.93 radiation 1.0 10 > th dose independent rect. 7 23
316 269.02 humidity 90.0 10 < th dose dependent rect. 22 20
322 269.12 humidity 80.0 720 > th dose independent rect. 10 4
334 269.30 radiation 1.0 720 < th dose independent rect. 8 11
358 269.58 radiation 10.0 10 < th dose dependent rect. 18 23
369 269.75 radiation 1.0 10 < th dose independent rect. 1 23
382 269.89 humidity 80.0 10 < th dose independent rect. 6 12
395 270.02 radiation 10.0 10 < th dose dependent rect. 3 23
407 270.11 radiation 1.0 720 < th dose dependent rect. 7 13
420 270.23 wind 7.0 720 < th dose independent rect. 21 23
427 270.31 wind 1.0 90 > th dose independent rect. 1 19
431 270.38 radiation 1.0 30 > th dose independent sin 23 NA
432 270.39 humidity 90.0 10 < th dose dependent rect. 24 18
443 270.55 wind 1.0 90 > th dose independent rect. 3 17
450 270.60 radiation 1.0 720 < th dose independent rect. 8 20
454 270.64 radiation 10.0 10 < th dose independent rect. 6 23
456 270.64 radiation 1.0 720 < th dose dependent rect. 8 20
466 270.78 humidity 80.0 720 > th dose independent rect. 9 6
480 270.90 temperature 20.0 30 > th dose independent rect. 18 2
484 270.93 temperature 15.0 10 > th dose dependent rect. 5 13
527 271.33 humidity 90.0 10 < th dose dependent sin 0 NA
562 271.57 wind 9.0 30 < th dose dependent rect. 18 2
579 271.70 wind 7.0 720 < th dose independent rect. 7 21
582 271.73 wind 7.0 30 < th dose independent rect. 18 2
593 271.79 humidity 80.0 10 < th dose independent rect. 24 18
602 271.86 humidity 70.0 720 > th dose dependent rect. 11 2
627 272.04 precipitation 0.1 30 < th dose independent rect. 20 22
628 272.04 precipitation 0.1 30 < th dose dependent rect. 20 22
642 272.10 wind 5.0 720 < th dose independent rect. 8 1
701 272.44 temperature 15.0 30 > th dose independent rect. 20 22
710 272.51 radiation 1.0 10 > th dose independent rect. 11 23
733 272.65 humidity 60.0 14400 > th dose independent rect. 21 10
740 272.67 radiation 1.0 10 > th dose independent rect. 5 13
760 272.69 radiation 1.0 10 > th dose independent rect. 17 23
782 272.80 radiation 1.0 10 > th dose independent no NA NA
783 272.80 radiation 1.0 10 < th dose independent no NA NA
784 272.80 atmosphere 995.0 30 > th dose independent rect. 18 2
821 272.80 radiation 1.0 10 < th dose independent rect. 11 21
846 272.80 radiation 1.0 10 < th dose independent rect. 13 23
847 272.80 radiation 1.0 10 < th dose independent rect. 15 23
849 272.81 temperature 10.0 30 > th dose independent rect. 18 2
851 272.81 humidity 50.0 30 > th dose independent rect. 18 2
852 272.81 atmosphere 1010.0 30 < th dose independent rect. 18 2
857 272.81 temperature 20.0 90 > th dose independent rect. 7 13
865 272.84 humidity 80.0 10 < th dose independent rect. 9 9
875 272.90 wind 1.0 30 > th dose independent rect. 18 2
895 273.01 humidity 50.0 30 > th dose dependent rect. 16 4
913 273.10 humidity 50.0 14400 > th dose independent rect. 19 2
941 273.19 radiation 1.0 10 < th dose independent rect. 17 23
944 273.20 wind 1.0 720 < th dose independent rect. 4 1
957 273.25 humidity 80.0 10 < th dose independent sin 0 NA
978 273.37 radiation 40.0 90 < th dose independent rect. 9 11