BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0456800 Os10g0456800|AK104810
(266 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0456800 Similar to PGPD14 protein 548 e-156
Os03g0145900 Zinc finger, CHY-type domain containing protein 354 4e-98
Os01g0719100 Similar to PGPD14 protein 352 2e-97
Os12g0538500 Similar to PGPD14 protein 298 3e-81
Os03g0348900 Zinc finger, CHY-type domain containing protein 259 1e-69
Os05g0551000 Zinc finger, CHY-type domain containing protein 167 9e-42
Os01g0689300 Conserved hypothetical protein 66 3e-11
>Os10g0456800 Similar to PGPD14 protein
Length = 266
Score = 548 bits (1411), Expect = e-156, Method: Compositional matrix adjust.
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MELESEQHGCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVI 60
MELESEQHGCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVI
Sbjct: 1 MELESEQHGCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVI 60
Query: 61 CSLCDKEQDVQQYCSGCGACMGKYFCEKCNFFDDDVSKNQYHCDGCGICRTGGVDKFFHC 120
CSLCDKEQDVQQYCSGCGACMGKYFCEKCNFFDDDVSKNQYHCDGCGICRTGGVDKFFHC
Sbjct: 61 CSLCDKEQDVQQYCSGCGACMGKYFCEKCNFFDDDVSKNQYHCDGCGICRTGGVDKFFHC 120
Query: 121 DKCGCCYSNVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHCGHTIHLECLNVMRAH 180
DKCGCCYSNVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHCGHTIHLECLNVMRAH
Sbjct: 121 DKCGCCYSNVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHCGHTIHLECLNVMRAH 180
Query: 181 HHFACPVCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCNDCGATSNVNFHVLAQ 240
HHFACPVCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCNDCGATSNVNFHVLAQ
Sbjct: 181 HHFACPVCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCNDCGATSNVNFHVLAQ 240
Query: 241 KCPGCSSYNTRETRGCGRPAAARSTV 266
KCPGCSSYNTRETRGCGRPAAARSTV
Sbjct: 241 KCPGCSSYNTRETRGCGRPAAARSTV 266
>Os03g0145900 Zinc finger, CHY-type domain containing protein
Length = 225
Score = 354 bits (909), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 171/221 (77%), Positives = 186/221 (84%), Gaps = 2/221 (0%)
Query: 46 NDRHEIPRHEIKKVICSLCDKEQDVQQYCSGCGACMGKYFCEKCNFFDDDVSKNQYHCDG 105
+D E +VICSLC+KEQDVQQ CS CGAC+GKYFC KCNF+DDDVSKNQ+HCDG
Sbjct: 7 SDLIETVLPSSSQVICSLCNKEQDVQQDCSNCGACLGKYFCAKCNFYDDDVSKNQFHCDG 66
Query: 106 CGICRTGGVDKFFHCDKCGCCYSNVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHC 165
CGICRTGG + FFHCDKCGCCYS VL+DSHHCVE AMHHNCPVCFEYLFDSTKDIS LHC
Sbjct: 67 CGICRTGGAENFFHCDKCGCCYSYVLKDSHHCVERAMHHNCPVCFEYLFDSTKDISALHC 126
Query: 166 GHTIHLECLNVMRAHHHFACPVCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCN 225
GHTIHLECL MR+H F+CPVC RSACDMS AW+KLD+EVAA+PMP YQKKMIWILCN
Sbjct: 127 GHTIHLECLYEMRSHQQFSCPVCLRSACDMSHAWQKLDQEVAASPMPVIYQKKMIWILCN 186
Query: 226 DCGATSNVNFHVLAQKCPGCSSYNTRETRGCGRPAAARSTV 266
DCG TSNV FH+L KCPGCSSYNTR+TR PAAA S V
Sbjct: 187 DCGTTSNVQFHILGHKCPGCSSYNTRQTR--AAPAAACSRV 225
>Os01g0719100 Similar to PGPD14 protein
Length = 302
Score = 352 bits (902), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 164/247 (66%), Positives = 195/247 (78%), Gaps = 2/247 (0%)
Query: 7 QHGCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVICSLCDK 66
Q+GC HY R CRIRAPCC E+F CRHCHNE KNS++I RHE+PRHE+++VICSLC
Sbjct: 58 QYGCAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAVKRHELPRHEVQQVICSLCGT 117
Query: 67 EQDVQQYCSGCGACMGKYFCEKCNFFDDDVSKNQYHCDGCGICRTGGVDKFFHCDKCGCC 126
EQ+V+Q C CG CMGKYFCE C FDDDVSK QYHC+GCGICR GG + FFHC KCGCC
Sbjct: 118 EQEVRQVCISCGVCMGKYFCEVCKLFDDDVSKQQYHCNGCGICRIGGKENFFHCSKCGCC 177
Query: 127 YSNVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHCGHTIHLECLNVMRAHHHFACP 186
YS VL++SH CVEGAMHH+CP+CFEYLF+ST D+SVL CGHTIH++CL M H FACP
Sbjct: 178 YSIVLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKCLREMEEHCQFACP 237
Query: 187 VCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCNDCGATSNVNFHVLAQKCPGCS 246
+CS+S CDMS AW++LDEE+A + + KM+ ILCNDCGATS V FH++A KC C
Sbjct: 238 LCSKSVCDMSKAWERLDEELAT--ISDTCDNKMVRILCNDCGATSEVQFHLIAHKCQKCK 295
Query: 247 SYNTRET 253
SYNTR+
Sbjct: 296 SYNTRQI 302
>Os12g0538500 Similar to PGPD14 protein
Length = 292
Score = 298 bits (763), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 142/254 (55%), Positives = 177/254 (69%), Gaps = 9/254 (3%)
Query: 7 QHGCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVICSLCDK 66
+HGCEHY R C+I APCCGEVF CRHCHN+A S DRH I R +++KV+C LCD
Sbjct: 30 EHGCEHYRRRCKIVAPCCGEVFACRHCHNDATAS-----GDRHTICRQDVEKVVCLLCDT 84
Query: 67 EQDVQQYCSGCGACMGKYFCEKCNFFDDDVSKNQYHCDGCGICRTGGVDKFFHCDKCGCC 126
EQ V Q C CG MG+YFC+ C F+DDD K Q+HC CGICR GG + +FHC KCG C
Sbjct: 85 EQPVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFHCYDCGICRVGGKENYFHCAKCGSC 144
Query: 127 YSNVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHCGHTIHLECLNVMRAHHHFACP 186
Y+ LRD+H CVE +M NCP+C+EYLFDS K VL CGHT+H+EC + M H+ + CP
Sbjct: 145 YAVALRDNHQCVENSMRQNCPICYEYLFDSLKGTRVLDCGHTMHMECFSEMVEHNKYTCP 204
Query: 187 VCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCNDCGATSNVNFHVLAQKCPGCS 246
+CS++A DM+ W LD+E+ AT MP Y+ K +W+LCNDC S V+FHV+ KC C+
Sbjct: 205 ICSKTALDMTHHWALLDQEIEATIMPPVYRYK-VWVLCNDCNKVSEVDFHVIGHKCSHCN 263
Query: 247 SYNTRETRGCGRPA 260
SYNTR T RPA
Sbjct: 264 SYNTRST---SRPA 274
>Os03g0348900 Zinc finger, CHY-type domain containing protein
Length = 260
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/252 (51%), Positives = 160/252 (63%), Gaps = 8/252 (3%)
Query: 9 GCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVICSLCDKEQ 68
GC+HY R CRIRAPCC +VF CRHCHNE+ D HE+ RH ++ VIC +CD EQ
Sbjct: 17 GCKHYRRRCRIRAPCCNDVFHCRHCHNESTK-------DGHELDRHAVESVICLVCDTEQ 69
Query: 69 DVQQYCSGCGACMGKYFCEKCNFFDDDVSKNQYHCDGCGICRTGGVDKFFHCDKCGCCYS 128
V Q C CG CMG+YFC C FFDDDV + +HC CGICR GG D FFHC+KCG CYS
Sbjct: 70 PVAQVCYNCGVCMGEYFCSACKFFDDDVDREHFHCQDCGICRVGGKDNFFHCEKCGSCYS 129
Query: 129 NVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHCGHTIHLECLNVMRAHHHFACPVC 188
LRD H C+E +M +NCP+C+EYLFDS ++ SVL CGHT+HL+C + M H F+CP+C
Sbjct: 130 VSLRDKHCCIENSMKNNCPICYEYLFDSLRETSVLRCGHTMHLQCFHEMLKHDKFSCPIC 189
Query: 189 SRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCNDCGATSNVNFHVLAQKCPGCSSY 248
S DM + LD E+ A + Y K WI+CNDC T+ V V KC C S+
Sbjct: 190 SMPIFDMDKFLRALDAEIEANMLHIDYMGKG-WIVCNDCRDTTQVYARVAGHKCCHCQSH 248
Query: 249 NTRETRGCGRPA 260
NT PA
Sbjct: 249 NTCRVAAPVLPA 260
>Os05g0551000 Zinc finger, CHY-type domain containing protein
Length = 811
Score = 167 bits (422), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 100/254 (39%), Positives = 136/254 (53%), Gaps = 20/254 (7%)
Query: 4 ESEQHGCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVICSL 63
E++ GCEHY R C++ A CC ++F CR CH++ + H + R +++C
Sbjct: 559 ENQIFGCEHYKRKCKLVAACCNKLFTCRFCHDKVSD---------HTMERKATVEMMCMQ 609
Query: 64 CDKEQDVQQYCSGC---GACMGKYFCEKCNFFDDDVSKNQYHCDGCGICRTG---GVDKF 117
C K Q V C G M KY+C C FFDD+ ++ YHC C +CR G G+D F
Sbjct: 610 CLKVQPVGPNCQTPSCNGLSMAKYYCSVCKFFDDE--RSVYHCPFCNLCRLGQGLGID-F 666
Query: 118 FHCDKCGCCYSNVLRDSHHCVEGAMHHNCPVCFEYLFDSTKDISVLHCGHTIHLECLNVM 177
FHC KC CC L + H C E + NCP+C ++LF S+ + L CGH +H C
Sbjct: 667 FHCMKCNCCLGMKLIE-HKCREKMLEMNCPICCDFLFTSSAAVKGLPCGHFMHSACFQAY 725
Query: 178 RAHHHFACPVCSRSACDMSDAWKKLDEEVAATPMPEFYQKKMIWILCNDCGATSNVNFHV 237
H + CP+CS+S DM+ + LD +AA +PE Y+ + ILCNDC FH
Sbjct: 726 TCSH-YTCPICSKSLGDMTVYFGMLDGLLAAEELPEEYRDRCQDILCNDCERKGRSRFHW 784
Query: 238 LAQKCPGCSSYNTR 251
L KC C SYNTR
Sbjct: 785 LYHKCGFCGSYNTR 798
>Os01g0689300 Conserved hypothetical protein
Length = 87
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 94 DDVSKNQYHCDGCGICRTG---GVDKFFHCDKCGCCYSNVLRDSHHCVEGAMHHNCPVCF 150
D + YHC C +CR G GVD FFHC KC CC L + H C E + NCP+C
Sbjct: 3 DFFFRTVYHCPFCNLCRLGKGLGVD-FFHCMKCNCCLGMKLTE-HKCREKGLETNCPICC 60
Query: 151 EYLFDSTKDISVLHCGHTIHLECLNV 176
++LF S+ + L CGH +H C V
Sbjct: 61 DFLFTSSAAVRALPCGHFMHSACFQV 86
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.138 0.494
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,745,068
Number of extensions: 470239
Number of successful extensions: 1685
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1653
Number of HSP's successfully gapped: 7
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)