Os12g0538500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PGPD14 protein.
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Os12g0538500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PGPD14 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.54 | 0.202 | 11.2 | -0.972 | 0.799 | 0.626 | 0.206 | 0.418 | -0.163 | 4.87 | 51.87 | 100 | -- | -- |
| 18.86 | 0.202 | 11.2 | -0.972 | 0.787 | 0.568 | 0.341 | -- | -0.164 | 4.77 | 45.06 | 116 | -- | -- |
| 18.63 | 0.201 | 11.2 | -0.973 | 0.795 | 0.631 | -- | 0.494 | -0.164 | 4.85 | 52.19 | 105 | -- | -- |
| 19.14 | 0.204 | 11.2 | -0.973 | 0.777 | 0.582 | -- | -- | -0.165 | 4.86 | 43.6 | 120 | -- | -- |
| 23.53 | 0.226 | 11.2 | -0.972 | -- | 1.03 | -- | 0.335 | -0.151 | -- | 6.37 | 460 | -- | -- |
| 23.66 | 0.228 | 11.2 | -0.986 | 1.05 | -- | 0.399 | -- | -0.2 | 3.59 | -- | -- | -- | -- |
| 24.15 | 0.23 | 11.2 | -0.992 | 1.05 | -- | -- | -- | -0.202 | 3.61 | -- | -- | -- | -- |
| 23.85 | 0.227 | 11.2 | -0.966 | -- | 1.02 | -- | -- | -0.149 | -- | 6.13 | 460 | -- | -- |
| 43.63 | 0.308 | 11.2 | -- | 0.642 | 0.642 | -- | -- | -0.0597 | 5.19 | 32.58 | 174 | -- | -- |
| 85.57 | 0.432 | 11.2 | -0.948 | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
| 50.1 | 0.331 | 11.2 | -- | 1.03 | -- | -- | -- | -0.0919 | 3.62 | -- | -- | -- | -- |
| 48.75 | 0.325 | 11.2 | -- | -- | 1.02 | -- | -- | -0.0158 | -- | 15.85 | 395 | -- | -- |
| 109.29 | 0.488 | 11.2 | -- | -- | -- | -- | -- | -0.0693 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 2 | 15.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 3 | 15.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 5 | 15.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 6 | 15.89 | temperature | 15 | 30 | > th | dose dependent | sin | 2 | NA |
| 10 | 15.91 | temperature | 30 | 30 | < th | dose dependent | sin | 1 | NA |
| 32 | 16.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 41 | 16.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 52 | 16.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 62 | 16.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 150 | 16.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 187 | 16.90 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 422 | 17.50 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 9 |
| 497 | 17.63 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 8 |
| 633 | 17.88 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 15 |
| 641 | 17.89 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 13 |
| 679 | 17.95 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 698 | 17.98 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 705 | 18.00 | radiation | 10 | 270 | > th | dose independent | rect. | 17 | 22 |
| 724 | 18.03 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 735 | 18.05 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 9 |
| 839 | 18.19 | radiation | 10 | 270 | > th | dose independent | sin | 3 | NA |
| 879 | 18.22 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 903 | 18.24 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 15 |
| 912 | 18.25 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 13 |
| 941 | 18.28 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 17 |
| 980 | 18.33 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 11 |
| 981 | 18.33 | radiation | 40 | 270 | < th | dose dependent | sin | 4 | NA |