BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0533400 Os12g0533400|AY364310
(364 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0533400 Similar to Rac GTPase activating protein 1 757 0.0
Os07g0408500 Similar to Rac GTPase activating protein 3 (Fr... 388 e-108
Os11g0153400 Similar to Rac GTPase activating protein 3 (Fr... 382 e-106
Os04g0577200 Similar to Rac GTPase activating protein 1 352 3e-97
Os02g0679500 Similar to Rac GTPase activating protein 1 336 2e-92
Os01g0967200 Similar to Rac GTPase activating protein 1 313 1e-85
Os12g0155200 Similar to Rac GTPase activating protein 219 2e-57
AK119830 67 3e-11
>Os12g0533400 Similar to Rac GTPase activating protein 1
Length = 364
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK
Sbjct: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
Query: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL
Sbjct: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
Query: 121 IKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEE 180
IKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEE
Sbjct: 121 IKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEE 180
Query: 181 LNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAASGDYTPYS 240
LNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAASGDYTPYS
Sbjct: 181 LNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAASGDYTPYS 240
Query: 241 SPASSSQQNDAEYYGSERDMDRSCEMSDMHSEISRSGRQVDFLVRYNTCFDSEQEGVDPL 300
SPASSSQQNDAEYYGSERDMDRSCEMSDMHSEISRSGRQVDFLVRYNTCFDSEQEGVDPL
Sbjct: 241 SPASSSQQNDAEYYGSERDMDRSCEMSDMHSEISRSGRQVDFLVRYNTCFDSEQEGVDPL 300
Query: 301 SDVEEGFLRQLEHDLEADKREESAKKQHEISSEIMAVKDVQAELKVEAKAAGNTQKEEGA 360
SDVEEGFLRQLEHDLEADKREESAKKQHEISSEIMAVKDVQAELKVEAKAAGNTQKEEGA
Sbjct: 301 SDVEEGFLRQLEHDLEADKREESAKKQHEISSEIMAVKDVQAELKVEAKAAGNTQKEEGA 360
Query: 361 GSLQ 364
GSLQ
Sbjct: 361 GSLQ 364
>Os07g0408500 Similar to Rac GTPase activating protein 3 (Fragment)
Length = 487
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 215/334 (64%), Positives = 250/334 (74%), Gaps = 25/334 (7%)
Query: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
MEIGWPTDVRHVAHVTFDR +GFLGLP EFE+E+P VPSASASVFGVS ESMQC +D
Sbjct: 74 MEIGWPTDVRHVAHVTFDRLNGFLGLPAEFELEIPGHVPSASASVFGVSPESMQCCFDDN 133
Query: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
GNSVP ILL MQERLYAQ GLKAEGIFRI PEN QEE+VR+QLN+G+VP+DIDVHCLASL
Sbjct: 134 GNSVPKILLLMQERLYAQDGLKAEGIFRITPENSQEENVREQLNRGLVPDDIDVHCLASL 193
Query: 121 IKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEE 180
IKAWFRELPEGVLDSLSPEQVL CN+E E +ELV LL PTQAALLNW VE MADVVEEEE
Sbjct: 194 IKAWFRELPEGVLDSLSPEQVLHCNTEEECVELVRLLPPTQAALLNWVVEFMADVVEEEE 253
Query: 181 LNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAASG------ 234
NKMNARN+AMVFAPNMTQMSDPLTALMHAVQVMN LKTLIL+TLRER+ S
Sbjct: 254 SNKMNARNVAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLREREHDESEYSAISS 313
Query: 235 --------DYTPYSSPASSSQQNDAEYYG-----SERDMDRSCEMSDMHSE---ISRSGR 278
D + +D + +G S++D+ + + + ++ + SR
Sbjct: 314 QSSSSDELDEMHHHVEQGGDSGSDTDNFGDDGSQSQKDVAKVLQQNVVNEQPIGASRRHT 373
Query: 279 QVDFLVRYNTCFDSEQEGVDPLSDVEEGFLRQLE 312
+DF + Y + S+ + V P +D+EE FLR+LE
Sbjct: 374 SIDFRLPY-ISYGSDDD-VSP-NDIEECFLRRLE 404
>Os11g0153400 Similar to Rac GTPase activating protein 3 (Fragment)
Length = 479
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/247 (72%), Positives = 205/247 (82%), Gaps = 1/247 (0%)
Query: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
MEIGWPTDV+HVAHVTFDRFHGFLGLPVE E E+P R PSASASVFGVS ESMQC+YD +
Sbjct: 89 MEIGWPTDVQHVAHVTFDRFHGFLGLPVELEPEVPRRAPSASASVFGVSTESMQCSYDSR 148
Query: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
GNSVPTILL MQ RLY QGGL+AEGIFRIN EN QEE VRDQLN G+VP+ ID+HCL+ L
Sbjct: 149 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEEFVRDQLNSGIVPDGIDIHCLSGL 208
Query: 121 IKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEE 180
IKAWFRELP GVLDS+ PEQV+QC SE + + L P +AALL WAV LMADVV+EE+
Sbjct: 209 IKAWFRELPSGVLDSIPPEQVMQCQSEEDCARVAKCLPPAEAALLEWAVNLMADVVQEEQ 268
Query: 181 LNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAASGDYT-PY 239
+NKMNARNIAMVFAPNMTQMSDPLTALM+AVQVMNFLK LI +TL+ R ++ D + P+
Sbjct: 269 INKMNARNIAMVFAPNMTQMSDPLTALMYAVQVMNFLKMLIQKTLKGRQESNLEDTSLPH 328
Query: 240 SSPASSS 246
P+ S
Sbjct: 329 KDPSDES 335
>Os04g0577200 Similar to Rac GTPase activating protein 1
Length = 479
Score = 352 bits (903), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 171/266 (64%), Positives = 205/266 (77%), Gaps = 4/266 (1%)
Query: 3 IGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGKGN 62
IG PTDVRHV+HVTFDRF GFLGLP + E E+P PSAS +VFGVS S+QC++D KGN
Sbjct: 95 IGRPTDVRHVSHVTFDRFGGFLGLPADLEPEVPSPTPSASVNVFGVSPTSLQCSFDHKGN 154
Query: 63 SVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASLIK 122
SVPTILL MQ +LY + GLK EGIFRIN EN QE VR QLN GVVP+++D+HCLA LIK
Sbjct: 155 SVPTILLMMQRKLYEREGLKIEGIFRINAENSQEICVRKQLNSGVVPDEVDLHCLAGLIK 214
Query: 123 AWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEELN 182
AWFRELP GVLDSL+PEQV+ CN+E + L ++L P +AALL+WA+ LMADVVE E N
Sbjct: 215 AWFRELPTGVLDSLTPEQVMHCNTEEDCALLASMLPPVEAALLDWAINLMADVVEHENYN 274
Query: 183 KMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAASGDYTPYSSP 242
KMNARNIAMVFAPNMTQM+DPLTAL+HAVQVMNFLKTLIL+TL+ER+ A TP ++
Sbjct: 275 KMNARNIAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILKTLKEREAAG----TPKTTE 330
Query: 243 ASSSQQNDAEYYGSERDMDRSCEMSD 268
S N + + +++R SD
Sbjct: 331 PCSGSPNGQDKPPTPENLERPIICSD 356
>Os02g0679500 Similar to Rac GTPase activating protein 1
Length = 483
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 157/222 (70%), Positives = 185/222 (83%)
Query: 11 HVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGKGNSVPTILLH 70
HV+HVTFDRF GFLGLP + E ++P PSAS SVFGVS SMQC+YD +GNSVPTILL
Sbjct: 116 HVSHVTFDRFVGFLGLPADLEPDVPRPAPSASVSVFGVSPTSMQCSYDNRGNSVPTILLT 175
Query: 71 MQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASLIKAWFRELPE 130
MQ++LY GGL+AEGIFRIN +N QE HVR+QLN GVVP+ +D+HCL LIKAWFRELP
Sbjct: 176 MQKKLYQLGGLQAEGIFRINADNSQELHVREQLNMGVVPDGVDMHCLTGLIKAWFRELPS 235
Query: 131 GVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEELNKMNARNIA 190
GVLDSL+PEQV+ CN+E E L + L P +AALL+WA+ LMADVVE E NKMNARNIA
Sbjct: 236 GVLDSLTPEQVMHCNTEEECALLASTLPPVEAALLDWAINLMADVVEHENYNKMNARNIA 295
Query: 191 MVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAA 232
MVFAPNMTQM+DPLTAL+HAVQVMNFLKTLIL+T++ R++ A
Sbjct: 296 MVFAPNMTQMADPLTALIHAVQVMNFLKTLILKTVKGREETA 337
>Os01g0967200 Similar to Rac GTPase activating protein 1
Length = 258
Score = 313 bits (803), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 152/228 (66%), Positives = 174/228 (76%), Gaps = 1/228 (0%)
Query: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
MEIGWPTDVRHVAHVTFDRFHGF GLPVE + E+ PSAS +VFGVS ESMQC+YD +
Sbjct: 25 MEIGWPTDVRHVAHVTFDRFHGFQGLPVELQPEVAGNAPSASKTVFGVSTESMQCSYDAR 84
Query: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPE-DIDVHCLAS 119
GNSVP+ILL MQ RLY QGGLKAEGIFRI ++ QE+ VR+QLN GV+PE +DVHCLA
Sbjct: 85 GNSVPSILLLMQRRLYEQGGLKAEGIFRIAADDAQEQAVREQLNSGVLPEGGVDVHCLAG 144
Query: 120 LIKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEE 179
LIKAWFRELP G+LDSL +V +C S + L L +AALL+WAV+LMADV EE
Sbjct: 145 LIKAWFRELPGGMLDSLPAAEVTRCQSADDCARLCARLPAAKAALLDWAVQLMADVAREE 204
Query: 180 ELNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRE 227
NKM +RN+AMVFAPNMT DP TAL HAV VMNFL LI R L +
Sbjct: 205 RSNKMGSRNVAMVFAPNMTHAMDPFTALKHAVHVMNFLTMLIDRALND 252
>Os12g0155200 Similar to Rac GTPase activating protein
Length = 129
Score = 219 bits (559), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 103/125 (82%), Positives = 109/125 (87%)
Query: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
MEIGWPTDV+HVAHVTFDRFHGFLGLPVEFE E+P R PSASASVFGVS ESMQC+YD +
Sbjct: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
Query: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
GNSVPTILL MQ RLY QGGL+AEGIFRIN EN QEE VRDQLN G+VPE IDVHCLA L
Sbjct: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
Query: 121 IKAWF 125
IK F
Sbjct: 121 IKVSF 125
>AK119830
Length = 1025
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 26/156 (16%)
Query: 61 GNSVPTILLHMQERLYAQ---GGLKAEGIFRINPENDQEEHVR---DQ-------LNKGV 107
G+SVPT + ER++A+ GL+ +GI+RI+ E++R DQ L+ G
Sbjct: 540 GHSVPTAV----ERMFAEVEARGLREQGIYRISGSKSAVENLRTAWDQQPAESIDLSTG- 594
Query: 108 VPEDIDVHCLASLIKAWFRELPEGVLDSLSPEQVLQCNS-EGE-----FLELVTLLRPTQ 161
E DVH +A IKAW RELPE ++ S + ++ N+ E + +++ +
Sbjct: 595 --EFSDVHTIAGAIKAWLRELPEPLITFDSYDALIATNAMENDDRLYAMRDIIWKMPKCH 652
Query: 162 AALLNWAVELMADVVEEEELNKMNARNIAMVFAPNM 197
+L E +A VVEE E+NKM A N+A+VF ++
Sbjct: 653 FDVLRRTAEHLARVVEEGEINKMLAHNVALVFGTSL 688
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,159,457
Number of extensions: 505683
Number of successful extensions: 1675
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1673
Number of HSP's successfully gapped: 8
Length of query: 364
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 262
Effective length of database: 11,709,973
Effective search space: 3068012926
Effective search space used: 3068012926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)