Os01g0967200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rac GTPase activating protein 1.
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Os01g0967200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rac GTPase activating protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.46 | 0.431 | -2110 | 12900 | 0.16 | -618000 | -0.0727 | 3780000 | -0.0373 | 4.3 | 995 | 10 | -- | -- |
| 84.62 | 0.432 | 3.19 | 0.127 | 0.16 | 2.35 | -0.0745 | -- | -0.0377 | 4.27 | 995 | 10 | -- | -- |
| 85.47 | 0.431 | -2110 | 12900 | 0.16 | -618000 | -- | 3780000 | -0.0372 | 4.45 | 995 | 10 | -- | -- |
| 84.23 | 0.427 | 3.2 | 0.123 | 0.159 | 2.57 | -- | -- | -0.0425 | 4.28 | 994.8 | 12 | -- | -- |
| 86.83 | 0.434 | -2110 | 12900 | -- | -618000 | -- | 3780000 | -0.0333 | -- | 995 | 10 | -- | -- |
| 90.65 | 0.446 | 3.2 | 0.142 | 0.129 | -- | -0.18 | -- | -0.0444 | 3.89 | -- | -- | -- | -- |
| 90.73 | 0.446 | 3.2 | 0.145 | 0.13 | -- | -- | -- | -0.0434 | 4.3 | -- | -- | -- | -- |
| 85.53 | 0.431 | 3.2 | 0.136 | -- | 2.48 | -- | -- | -0.0342 | -- | 994.8 | 12 | -- | -- |
| 84.68 | 0.429 | 3.2 | -- | 0.159 | 2.58 | -- | -- | -0.0425 | 4.33 | 994.8 | 12 | -- | -- |
| 91.64 | 0.447 | 3.2 | 0.15 | -- | -- | -- | -- | -0.04 | -- | -- | -- | -- | -- |
| 91.29 | 0.447 | 3.2 | -- | 0.133 | -- | -- | -- | -0.0596 | 4.28 | -- | -- | -- | -- |
| 86.02 | 0.432 | 3.2 | -- | -- | 2.49 | -- | -- | -0.0493 | -- | 994.8 | 11 | -- | -- |
| 92.24 | 0.448 | 3.2 | -- | -- | -- | -- | -- | -0.0566 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.09 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 3 | 84.06 | atmosphere | 995.0 | 90 | > th | dose independent | sin | 6 | NA |
| 4 | 84.08 | atmosphere | 995.0 | 10 | > th | dose independent | sin | 5 | NA |
| 10 | 84.28 | atmosphere | 995.0 | 90 | < th | dose independent | sin | 7 | NA |
| 11 | 84.28 | atmosphere | 995.0 | 10 | < th | dose independent | sin | 5 | NA |
| 13 | 84.28 | atmosphere | 995.0 | 30 | < th | dose independent | rect. | 18 | 22 |
| 15 | 84.28 | atmosphere | 995.0 | 30 | < th | dose dependent | sin | 6 | NA |
| 16 | 84.28 | atmosphere | 995.0 | 10 | < th | dose dependent | rect. | 18 | 22 |
| 22 | 84.30 | atmosphere | 995.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 23 | 84.30 | atmosphere | 995.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 152 | 84.30 | atmosphere | 995.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 153 | 84.30 | atmosphere | 995.0 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 310 | 84.59 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 311 | 84.59 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 15 | 19 |
| 322 | 84.74 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 345 | 84.75 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 15 | 3 |
| 464 | 85.30 | temperature | 30.0 | 10 | > th | dose dependent | sin | 12 | NA |
| 494 | 85.53 | atmosphere | 995.0 | 10 | < th | dose dependent | no | NA | NA |
| 730 | 85.97 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 731 | 86.02 | humidity | 90.0 | 90 | > th | dose independent | rect. | 22 | 1 |
| 759 | 86.18 | wind | 9.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 765 | 86.25 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 766 | 86.25 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 776 | 86.27 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 780 | 86.27 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 786 | 86.27 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 787 | 86.27 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 807 | 86.27 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 810 | 86.27 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 847 | 86.39 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 850 | 86.41 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 853 | 86.44 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 856 | 86.47 | wind | 3.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 859 | 86.49 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 860 | 86.50 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 863 | 86.51 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 17 |
| 874 | 86.57 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 879 | 86.59 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 880 | 86.59 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 881 | 86.60 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 890 | 86.63 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 892 | 86.63 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 893 | 86.63 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 897 | 86.63 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 899 | 86.63 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 904 | 86.63 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 905 | 86.63 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 906 | 86.63 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 911 | 86.63 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 918 | 86.67 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 923 | 86.69 | wind | 3.0 | 10 | < th | dose dependent | rect. | 23 | 1 |
| 953 | 86.74 | temperature | 30.0 | 10 | > th | dose independent | rect. | 15 | 1 |