Os12g0533400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rac GTPase activating protein 1.
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Os12g0533400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rac GTPase activating protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.32 | 0.557 | 6.15 | -0.982 | 0.152 | 1.01 | -0.991 | 0.503 | -0.391 | 22.1 | 20.56 | 1426 | -- | -- |
| 140.59 | 0.552 | 6.17 | -1.07 | 0.168 | 1.03 | -0.874 | -- | -0.415 | 21.8 | 20.91 | 1416 | -- | -- |
| 143.24 | 0.557 | 6.16 | -1.04 | 0.207 | 1.04 | -- | 0.115 | -0.412 | 19 | 20.98 | 1352 | -- | -- |
| 143.24 | 0.557 | 6.17 | -1.08 | 0.208 | 1.05 | -- | -- | -0.423 | 18.9 | 21.12 | 1341 | -- | -- |
| 145.54 | 0.562 | 6.16 | -1.06 | -- | 1.05 | -- | 0.0709 | -0.421 | -- | 20.9 | 1327 | -- | -- |
| 176.45 | 0.623 | 6.12 | -0.747 | 0.19 | -- | -0.942 | -- | -0.185 | 22.3 | -- | -- | -- | -- |
| 179.86 | 0.628 | 6.12 | -0.707 | 0.206 | -- | -- | -- | -0.181 | 21.2 | -- | -- | -- | -- |
| 145.54 | 0.562 | 6.17 | -1.08 | -- | 1.06 | -- | -- | -0.426 | -- | 20.99 | 1305 | -- | -- |
| 170.4 | 0.608 | 6.12 | -- | 0.21 | 0.767 | -- | -- | -0.224 | 18.9 | 23.23 | 1311 | -- | -- |
| 182.32 | 0.631 | 6.11 | -0.706 | -- | -- | -- | -- | -0.182 | -- | -- | -- | -- | -- |
| 193.04 | 0.65 | 6.1 | -- | 0.206 | -- | -- | -- | -0.103 | 21 | -- | -- | -- | -- |
| 172.74 | 0.612 | 6.12 | -- | -- | 0.765 | -- | -- | -0.233 | -- | 22.81 | 1287 | -- | -- |
| 195.48 | 0.653 | 6.09 | -- | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 46 | 137.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 134 | 138.10 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 147 | 138.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 223 | 138.83 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 441 | 139.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 538 | 140.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 565 | 140.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 567 | 140.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 601 | 140.38 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 653 | 140.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 683 | 140.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 786 | 140.78 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 825 | 140.85 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 887 | 140.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 20 |