BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0533400 Os12g0533400|AY364310
(364 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G03100.1 | chr4:1374361-1375913 FORWARD LENGTH=431 430 e-121
AT5G22400.1 | chr5:7423050-7425335 REVERSE LENGTH=467 376 e-105
AT3G11490.1 | chr3:3617523-3619567 REVERSE LENGTH=436 375 e-104
AT2G46710.1 | chr2:19192105-19194656 FORWARD LENGTH=456 374 e-104
AT1G08340.1 | chr1:2631308-2632669 FORWARD LENGTH=332 339 1e-93
>AT4G03100.1 | chr4:1374361-1375913 FORWARD LENGTH=431
Length = 430
Score = 430 bits (1106), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/320 (66%), Positives = 252/320 (78%), Gaps = 10/320 (3%)
Query: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
MEIGWPT+VRH+ HVTFDRFHGFLGLP E +VE+PCRVPSAS SVFGVSAESMQC+YD K
Sbjct: 78 MEIGWPTNVRHITHVTFDRFHGFLGLPHELQVEIPCRVPSASVSVFGVSAESMQCSYDEK 137
Query: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
GNSVPTILL MQERLY+Q GLKAEGIFRINPEN QEEHVRDQLN+G+VPE+IDVHCLA L
Sbjct: 138 GNSVPTILLLMQERLYSQQGLKAEGIFRINPENSQEEHVRDQLNRGIVPENIDVHCLAGL 197
Query: 121 IKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEE 180
IKAWFRELP GVLD LSPE+VL CN+E E +EL+ L+PT++ALLNWAV+LMADVVEEEE
Sbjct: 198 IKAWFRELPSGVLDGLSPEEVLNCNTEDESVELIKQLKPTESALLNWAVDLMADVVEEEE 257
Query: 181 LNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAASGDYTPYS 240
NKMNARNIAMVFAPNMTQM+DPLTALMHAVQVMN LKTLI +TL ER++ A+G YS
Sbjct: 258 SNKMNARNIAMVFAPNMTQMTDPLTALMHAVQVMNLLKTLITKTLAEREENATGSEG-YS 316
Query: 241 SPASSSQQNDAEYYGSERDMDRSCEMSDMHSEIS------RSGRQVDFLVRYNTCFDSEQ 294
SS+ Q D++ ++ DM+ SCE SE + + L R++T D +
Sbjct: 317 PSHSSNSQTDSDSDNAQ-DMEVSCESQATDSECGEEEEVEEVEQHQEHLSRHSTHED--E 373
Query: 295 EGVDPLSDVEEGFLRQLEHD 314
+ L +E+ FL QL ++
Sbjct: 374 TDIGSLCSIEKCFLNQLNNN 393
>AT5G22400.1 | chr5:7423050-7425335 REVERSE LENGTH=467
Length = 466
Score = 376 bits (966), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/262 (69%), Positives = 211/262 (80%), Gaps = 10/262 (3%)
Query: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
MEIGWPT+VRHVAHVTFDRF+GFLGLPVEFE E+P R PSASA+VFGVS ESMQ +YD +
Sbjct: 115 MEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSYDSR 174
Query: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
GN VPTILL MQ LY+QGGL+AEGIFR+ EN +EE VR+QLN+G +PE IDVHCLA L
Sbjct: 175 GNCVPTILLLMQNCLYSQGGLQAEGIFRLTAENSEEEAVREQLNRGFIPERIDVHCLAGL 234
Query: 121 IKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEE 180
IKAWFRELP VLDSLSPEQV+QC +E E +ELV LL PT+AALL+WA+ LMADVV+ E
Sbjct: 235 IKAWFRELPTSVLDSLSPEQVMQCQTEEENVELVRLLPPTEAALLDWAINLMADVVQYEH 294
Query: 181 LNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAA-------- 232
LNKMN+RNIAMVFAPNMTQM DPLTALM+AVQVMNFLKTLI +TLRER D+
Sbjct: 295 LNKMNSRNIAMVFAPNMTQMDDPLTALMYAVQVMNFLKTLIEKTLRERQDSVVEQAHAFP 354
Query: 233 --SGDYTPYSSPASSSQQNDAE 252
D + + SP+ S N +E
Sbjct: 355 LEPSDESGHQSPSQSLAFNTSE 376
>AT3G11490.1 | chr3:3617523-3619567 REVERSE LENGTH=436
Length = 435
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/250 (71%), Positives = 211/250 (84%), Gaps = 1/250 (0%)
Query: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
MEIG PTDVRHVAHVTFDRFHGFLGLPVEFE E+P R PSASA+VFGVS ESMQ +YD +
Sbjct: 91 MEIGVPTDVRHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSYDTR 150
Query: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
GN VPTILL MQ LY++GGL+ EGIFRIN EN QEE++R++LNKG++P++IDVHCLASL
Sbjct: 151 GNIVPTILLMMQSHLYSRGGLRVEGIFRINGENGQEEYIREELNKGIIPDNIDVHCLASL 210
Query: 121 IKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEE 180
IKAWFRELP GVLDSLSPEQV++ SE E +ELV LL T+A+LL+WA+ LMADVVE E+
Sbjct: 211 IKAWFRELPSGVLDSLSPEQVMESESEDECVELVRLLPSTEASLLDWAINLMADVVEMEQ 270
Query: 181 LNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAASGDYTPYS 240
LNKMNARNIAMVFAPNMTQM DPLTALM+AVQVMNFLKTLI++TL++R ++ P S
Sbjct: 271 LNKMNARNIAMVFAPNMTQMLDPLTALMYAVQVMNFLKTLIVKTLKDRKESRD-KLVPAS 329
Query: 241 SPASSSQQND 250
+P+ D
Sbjct: 330 NPSPRDHNGD 339
>AT2G46710.1 | chr2:19192105-19194656 FORWARD LENGTH=456
Length = 455
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 172/231 (74%), Positives = 202/231 (87%)
Query: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
M+IGWPT+V+HV+HVTFDRF+GFLGLP E E E+P R PSAS SVFGVSA+SMQC+YD +
Sbjct: 103 MDIGWPTEVKHVSHVTFDRFNGFLGLPSELEPEVPPRAPSASVSVFGVSAKSMQCSYDDR 162
Query: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
GNSVPTILL MQ+RLY +GGLKAEGIFRINP+N +EEHVR QLN GVVP IDVHCLA L
Sbjct: 163 GNSVPTILLRMQKRLYTEGGLKAEGIFRINPDNGKEEHVRRQLNCGVVPRGIDVHCLAGL 222
Query: 121 IKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEE 180
IKAWFRELP GVLD L+PEQV++CN+E + LV LL P ++A+L+WA+ LMADVVE E+
Sbjct: 223 IKAWFRELPTGVLDVLTPEQVMRCNTEEDCSRLVILLPPVESAILDWAIGLMADVVEHEQ 282
Query: 181 LNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDA 231
NKMNARN+AMVFAPNMTQM+DPLTAL+HAVQVMNFLKTLIL L+ER++A
Sbjct: 283 FNKMNARNVAMVFAPNMTQMADPLTALIHAVQVMNFLKTLILMNLKERENA 333
>AT1G08340.1 | chr1:2631308-2632669 FORWARD LENGTH=332
Length = 331
Score = 339 bits (870), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 155/233 (66%), Positives = 196/233 (84%)
Query: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
M+IG PT++RHVAHVTFDRF GFLGLP EFE ++P + PSASA+VFGVS ESMQ +YD +
Sbjct: 1 MDIGGPTNIRHVAHVTFDRFDGFLGLPSEFEPDVPRKAPSASATVFGVSTESMQLSYDSR 60
Query: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
GN VP ILL +Q RLY QGGL+AEG+FRI EN +EE VR+QLNKG++P+ IDVHCLA L
Sbjct: 61 GNCVPVILLLLQSRLYDQGGLQAEGVFRITGENSEEEFVREQLNKGIIPDGIDVHCLAGL 120
Query: 121 IKAWFRELPEGVLDSLSPEQVLQCNSEGEFLELVTLLRPTQAALLNWAVELMADVVEEEE 180
IKAWFRELP GVLD L EQV+QC S+ +F+++V LL T+A+LLNWA+ LMADV++ E
Sbjct: 121 IKAWFRELPRGVLDPLPSEQVMQCESDEDFVKVVRLLPQTEASLLNWAINLMADVIQFEH 180
Query: 181 LNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNFLKTLILRTLRERDDAAS 233
+NKMN+RN+A+VFAPNM+QM+DPLTALM+AVQVM LK+L +T+RER+ ++S
Sbjct: 181 VNKMNSRNLALVFAPNMSQMADPLTALMYAVQVMKLLKSLTEKTVREREASSS 233
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,843,703
Number of extensions: 330613
Number of successful extensions: 1223
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1222
Number of HSP's successfully gapped: 5
Length of query: 364
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,364,969
Effective search space: 2208351816
Effective search space used: 2208351816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)