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Os02g0679500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Rac GTPase activating protein 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.49 (0.0189) R2 : 0.0553
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.206 (0.0398) R2dN8 : 0.0714 R2N8 : 0.0553
σ : 0.356
deviance : 58.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.83 0.234 9.55 0.19 0.581 1.13 0.434 -1.74 0.0537 1.66 9.988 82 -- --
26.53 0.24 9.51 0.442 0.587 1.13 0.844 -- 0.122 1.85 10.32 106 -- --
25.38 0.235 9.55 0.138 0.575 1.11 -- -2.17 0.0515 1.57 14.2 58 -- --
27.65 0.245 9.5 0.401 0.439 1.11 -- -- 0.106 3.33 10.21 490 -- --
28.88 0.25 9.52 0.29 -- 1.05 -- -0.333 0.0838 -- -21.51 999 -- --
38.88 0.292 9.48 0.672 0.314 -- 0.671 -- 0.277 0.551 -- -- -- --
40.8 0.299 9.48 0.646 0.312 -- -- -- 0.274 0.427 -- -- -- --
28.97 0.251 9.52 0.358 -- 1.04 -- -- 0.104 -- 1.491 999 -- --
30.8 0.258 9.53 -- 0.189 1.17 -- -- 0.0459 3.65 14.32 891 -- --
46.92 0.32 9.48 0.657 -- -- -- -- 0.279 -- -- -- -- --
51.81 0.337 9.5 -- 0.322 -- -- -- 0.202 0.529 -- -- -- --
31.93 0.263 9.53 -- -- 1.19 -- -- 0.0438 -- 0.1848 1021 -- --
58.3 0.356 9.49 -- -- -- -- -- 0.206 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 23.05 temperature 10 270 > th dose dependent rect. 24 23
2 23.46 temperature 30 10 < th dose dependent rect. 7 21
4 23.59 temperature 15 270 > th dose dependent rect. 10 23
8 23.70 temperature 30 720 < th dose dependent rect. 8 18
30 23.98 temperature 10 720 > th dose dependent rect. 10 19
86 24.37 temperature 10 720 > th dose dependent sin 17 NA
104 24.50 temperature 25 10 < th dose dependent rect. 16 22
132 24.65 temperature 10 1440 > th dose dependent rect. 11 1
142 24.70 temperature 10 1440 > th dose dependent rect. 9 3
162 24.76 temperature 30 720 < th dose dependent sin 19 NA
188 24.84 temperature 10 90 > th dose dependent no NA NA
193 24.84 temperature 25 10 < th dose dependent rect. 19 23
196 24.85 temperature 25 10 < th dose dependent no NA NA
200 24.85 temperature 25 10 < th dose dependent rect. 9 23
214 24.88 temperature 25 10 < th dose dependent rect. 11 23
215 24.88 temperature 25 10 < th dose dependent rect. 23 23
224 24.91 temperature 25 10 < th dose dependent rect. 13 23
232 24.93 temperature 25 10 < th dose dependent rect. 3 23
233 24.93 temperature 25 10 < th dose dependent rect. 21 23
267 25.00 temperature 10 720 > th dose dependent rect. 15 23
283 25.03 temperature 30 90 < th dose dependent rect. 11 16
294 25.05 temperature 10 720 > th dose dependent rect. 17 23
308 25.08 temperature 25 30 < th dose dependent rect. 1 23
356 25.18 temperature 30 1440 < th dose dependent rect. 7 5
389 25.25 temperature 10 1440 > th dose dependent sin 2 NA
423 25.29 temperature 10 1440 > th dose dependent rect. 4 14
447 25.32 temperature 15 720 > th dose dependent rect. 4 23
594 25.47 temperature 15 10 > th dose dependent rect. 24 23
605 25.49 temperature 30 1440 < th dose dependent rect. 9 1
787 25.63 temperature 15 10 > th dose dependent rect. 3 20
812 25.66 temperature 30 90 < th dose dependent sin 15 NA
827 25.67 temperature 30 10 < th dose dependent sin 14 NA
845 25.68 temperature 15 270 > th dose dependent rect. 15 15