Os12g0155200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rac GTPase activating protein.
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Os12g0155200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rac GTPase activating protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.98 | 0.379 | 11.4 | -1.34 | 2.3 | -1.59 | 0.801 | 0.0209 | -0.587 | 5.86 | 26.14 | 74 | -- | -- |
| 64.98 | 0.375 | 11.4 | -1.34 | 2.3 | -1.6 | 0.804 | -- | -0.587 | 5.86 | 26.17 | 76 | -- | -- |
| 66.43 | 0.38 | 11.5 | -1.37 | 2.3 | -1.57 | -- | 0.252 | -0.595 | 5.9 | 26.14 | 81 | -- | -- |
| 66.4 | 0.38 | 11.4 | -1.33 | 2.32 | -1.57 | -- | -- | -0.578 | 5.94 | 26.04 | 114 | -- | -- |
| 291.17 | 0.795 | 11.5 | -1.16 | -- | -1.63 | -- | -0.978 | -0.554 | -- | 29.89 | 1351 | -- | -- |
| 101.54 | 0.472 | 11.4 | -0.947 | 2.09 | -- | 0.594 | -- | -0.24 | 6.41 | -- | -- | -- | -- |
| 102.41 | 0.474 | 11.4 | -0.939 | 2.1 | -- | -- | -- | -0.242 | 6.43 | -- | -- | -- | -- |
| 289.39 | 0.792 | 11.5 | -1.37 | -- | -1.55 | -- | -- | -0.482 | -- | 37.47 | 1345 | -- | -- |
| 107.74 | 0.486 | 11.4 | -- | 2.17 | -1.04 | -- | -- | -0.333 | 6.04 | 25.9 | 105 | -- | -- |
| 330.82 | 0.85 | 11.4 | -0.885 | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
| 125.63 | 0.524 | 11.3 | -- | 2.08 | -- | -- | -- | -0.137 | 6.45 | -- | -- | -- | -- |
| 332.6 | 0.849 | 11.4 | -- | -- | -0.978 | -- | -- | -0.244 | -- | 42.05 | 1337 | -- | -- |
| 351.48 | 0.875 | 11.4 | -- | -- | -- | -- | -- | -0.0993 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.62 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 3 | 61.08 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 4 | 61.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 22 | 62.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 32 | 62.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 34 | 62.81 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 40 | 62.89 | temperature | 20 | 720 | > th | dose dependent | sin | 14 | NA |
| 41 | 62.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 11 |
| 47 | 63.09 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 81 | 63.72 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 117 | 64.35 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 128 | 64.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 11 |
| 168 | 64.80 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 172 | 64.85 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 198 | 65.12 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 5 |
| 221 | 65.35 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 244 | 65.55 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 270 | 65.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 298 | 66.05 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 306 | 66.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 314 | 66.20 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 336 | 66.34 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 348 | 66.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 376 | 66.53 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 394 | 66.63 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 408 | 66.69 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 442 | 66.92 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 533 | 67.42 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 576 | 67.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 776 | 68.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 856 | 68.73 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 882 | 68.84 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 903 | 68.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 941 | 69.03 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 974 | 69.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 8 |