BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0155200 Os12g0155200|AK067300
(129 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0155200 Similar to Rac GTPase activating protein 266 3e-72
Os11g0153400 Similar to Rac GTPase activating protein 3 (Fr... 251 8e-68
Os12g0533400 Similar to Rac GTPase activating protein 1 219 3e-58
Os01g0967200 Similar to Rac GTPase activating protein 1 213 2e-56
Os07g0408500 Similar to Rac GTPase activating protein 3 (Fr... 198 9e-52
Os04g0577200 Similar to Rac GTPase activating protein 1 190 2e-49
Os02g0679500 Similar to Rac GTPase activating protein 1 185 8e-48
>Os12g0155200 Similar to Rac GTPase activating protein
Length = 129
Score = 266 bits (680), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR
Sbjct: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
Query: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL
Sbjct: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
Query: 121 IKVSFFLLF 129
IKVSFFLLF
Sbjct: 121 IKVSFFLLF 129
>Os11g0153400 Similar to Rac GTPase activating protein 3 (Fragment)
Length = 479
Score = 251 bits (642), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 118/128 (92%), Positives = 121/128 (94%)
Query: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
MEIGWPTDVQHVAHVTFDRFHGFLGLPVE EPEVPRRAPSASASVFGVSTESMQCSYDSR
Sbjct: 89 MEIGWPTDVQHVAHVTFDRFHGFLGLPVELEPEVPRRAPSASASVFGVSTESMQCSYDSR 148
Query: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEE VRDQLN GIVP+GID+HCL+GL
Sbjct: 149 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEEFVRDQLNSGIVPDGIDIHCLSGL 208
Query: 121 IKVSFFLL 128
IK F L
Sbjct: 209 IKAWFREL 216
>Os12g0533400 Similar to Rac GTPase activating protein 1
Length = 364
Score = 219 bits (559), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 103/125 (82%), Positives = 109/125 (87%)
Query: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
MEIGWPTDV+HVAHVTFDRFHGFLGLPVEFE E+P R PSASASVFGVS ESMQC+YD +
Sbjct: 1 MEIGWPTDVRHVAHVTFDRFHGFLGLPVEFEVEMPCRVPSASASVFGVSAESMQCTYDGK 60
Query: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
GNSVPTILL MQ RLY QGGL+AEGIFRIN EN QEE VRDQLN G+VPE IDVHCLA L
Sbjct: 61 GNSVPTILLHMQERLYAQGGLKAEGIFRINPENDQEEHVRDQLNKGVVPEDIDVHCLASL 120
Query: 121 IKVSF 125
IK F
Sbjct: 121 IKAWF 125
>Os01g0967200 Similar to Rac GTPase activating protein 1
Length = 258
Score = 213 bits (543), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 114/126 (90%), Gaps = 1/126 (0%)
Query: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
MEIGWPTDV+HVAHVTFDRFHGF GLPVE +PEV APSAS +VFGVSTESMQCSYD+R
Sbjct: 25 MEIGWPTDVRHVAHVTFDRFHGFQGLPVELQPEVAGNAPSASKTVFGVSTESMQCSYDAR 84
Query: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPE-GIDVHCLAG 119
GNSVP+ILL+MQRRLYEQGGL+AEGIFRI A+++QE+ VR+QLN G++PE G+DVHCLAG
Sbjct: 85 GNSVPSILLLMQRRLYEQGGLKAEGIFRIAADDAQEQAVREQLNSGVLPEGGVDVHCLAG 144
Query: 120 LIKVSF 125
LIK F
Sbjct: 145 LIKAWF 150
>Os07g0408500 Similar to Rac GTPase activating protein 3 (Fragment)
Length = 487
Score = 198 bits (503), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 94/125 (75%), Positives = 103/125 (82%)
Query: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
MEIGWPTDV+HVAHVTFDR +GFLGLP EFE E+P PSASASVFGVS ESMQC +D
Sbjct: 74 MEIGWPTDVRHVAHVTFDRLNGFLGLPAEFELEIPGHVPSASASVFGVSPESMQCCFDDN 133
Query: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
GNSVP ILL+MQ RLY Q GL+AEGIFRI ENSQEE VR+QLN G+VP+ IDVHCLA L
Sbjct: 134 GNSVPKILLLMQERLYAQDGLKAEGIFRITPENSQEENVREQLNRGLVPDDIDVHCLASL 193
Query: 121 IKVSF 125
IK F
Sbjct: 194 IKAWF 198
>Os04g0577200 Similar to Rac GTPase activating protein 1
Length = 479
Score = 190 bits (483), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/123 (72%), Positives = 103/123 (83%)
Query: 3 IGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSRGN 62
IG PTDV+HV+HVTFDRF GFLGLP + EPEVP PSAS +VFGVS S+QCS+D +GN
Sbjct: 95 IGRPTDVRHVSHVTFDRFGGFLGLPADLEPEVPSPTPSASVNVFGVSPTSLQCSFDHKGN 154
Query: 63 SVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGLIK 122
SVPTILLMMQR+LYE+ GL+ EGIFRINAENSQE VR QLN G+VP+ +D+HCLAGLIK
Sbjct: 155 SVPTILLMMQRKLYEREGLKIEGIFRINAENSQEICVRKQLNSGVVPDEVDLHCLAGLIK 214
Query: 123 VSF 125
F
Sbjct: 215 AWF 217
>Os02g0679500 Similar to Rac GTPase activating protein 1
Length = 483
Score = 185 bits (469), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 100/115 (86%)
Query: 11 HVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSRGNSVPTILLM 70
HV+HVTFDRF GFLGLP + EP+VPR APSAS SVFGVS SMQCSYD+RGNSVPTILL
Sbjct: 116 HVSHVTFDRFVGFLGLPADLEPDVPRPAPSASVSVFGVSPTSMQCSYDNRGNSVPTILLT 175
Query: 71 MQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGLIKVSF 125
MQ++LY+ GGL+AEGIFRINA+NSQE VR+QLN G+VP+G+D+HCL GLIK F
Sbjct: 176 MQKKLYQLGGLQAEGIFRINADNSQELHVREQLNMGVVPDGVDMHCLTGLIKAWF 230
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,512,902
Number of extensions: 175227
Number of successful extensions: 399
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 7
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)