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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0408500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Rac GTPase activating protein 3 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0319) R2 : 0.182
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.34 (0.547) R2dE : 0.171 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.195 (0.0673) R2dN8 : 0.0196 R2N8 : 0.0113
σ : 0.6
deviance : 165.87
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.9099
memory length : 26
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.89
open length of G : 0.977

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.72 0.596 3.02 0.487 0.294 -9.24 0.116 90 0.187 8.43 1 10 7 1
164.48 0.602 3.07 0.0322 0.296 5.42 0.12 -- 0.187 8.42 1 10 7 1
163.76 0.596 3.02 0.491 0.294 -9.24 -- 90.1 0.187 8.43 1 10 7 1
161.87 0.593 3.07 0.0085 0.269 5.16 -- -- 0.193 8.49 0.8588 8 7.9 0.879
168.55 0.605 3.02 0.496 -- -9.23 -- 91.2 0.187 -- 1 10 7 1
193.61 0.652 3.08 0.0557 0.343 -- 0.264 -- 0.174 8.26 -- -- -- --
193.82 0.652 3.08 0.064 0.342 -- -- -- 0.174 8.36 -- -- -- --
165.87 0.6 3.08 0.00553 -- 5.33 -- -- 0.196 -- 0.8793 18 7.9 1.04
161.87 0.593 3.07 -- 0.268 5.16 -- -- 0.192 8.55 0.861 12 7.9 0.763
200.33 0.661 3.09 0.066 -- -- -- -- 0.178 -- -- -- -- --
193.93 0.651 3.08 -- 0.342 -- -- -- 0.167 8.35 -- -- -- --
165.87 0.6 3.08 -- -- 5.34 -- -- 0.195 -- 0.9099 26 7.89 0.977
200.44 0.661 3.09 -- -- -- -- -- 0.171 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.72 wind 1 10 < th dose independent rect. 7 1
2 163.99 wind 1 10 < th dose dependent rect. 7 1
3 164.37 atmosphere 1000 10 < th dose independent rect. 7 1
10 164.37 atmosphere 1000 10 < th dose dependent rect. 7 1
18 164.39 humidity 70 10 < th dose independent rect. 7 1
78 164.39 humidity 70 10 < th dose dependent rect. 7 1
162 173.55 radiation 20 90 > th dose dependent rect. 6 2
180 174.30 radiation 30 10 > th dose independent rect. 7 1
327 179.25 atmosphere 1000 270 < th dose independent rect. 4 1
328 179.25 atmosphere 1000 270 < th dose dependent rect. 4 1
394 180.41 temperature 25 30 > th dose dependent rect. 7 1
442 181.68 temperature 25 30 > th dose dependent rect. 5 3
623 183.66 temperature 25 30 > th dose independent rect. 7 1
683 184.11 atmosphere 1010 30 < th dose dependent rect. 8 1
729 184.56 atmosphere 995 4320 > th dose independent rect. 10 3
742 184.67 atmosphere 995 4320 > th dose independent rect. 9 5
829 185.28 atmosphere 1000 10 < th dose independent rect. 6 7
911 185.78 atmosphere 995 4320 > th dose independent rect. 9 8
912 185.79 radiation 1 4320 < th dose dependent rect. 23 1
934 185.84 atmosphere 995 4320 > th dose independent rect. 2 11
940 185.91 atmosphere 1010 30 < th dose dependent rect. 4 5
947 185.97 radiation 10 30 > th dose independent rect. 11 22
958 186.07 atmosphere 1010 270 < th dose dependent rect. 4 1
963 186.12 atmosphere 995 4320 < th dose dependent rect. 14 1
974 186.13 atmosphere 995 4320 > th dose independent rect. 15 1
994 186.23 atmosphere 995 4320 > th dose independent rect. 12 5
995 186.23 atmosphere 995 4320 > th dose independent rect. 4 9
998 186.25 atmosphere 995 4320 < th dose independent rect. 14 1