Os04g0577200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rac GTPase activating protein 1.
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Os04g0577200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rac GTPase activating protein 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.24 | 0.263 | 11 | 0.866 | 1.3 | 0.625 | -0.686 | -0.955 | 0.142 | 23 | 21.99 | 1449 | -- | -- |
| 31.79 | 0.263 | 11 | 1.1 | 1.27 | 0.632 | -0.698 | -- | 0.21 | 23 | 18.96 | 2740 | -- | -- |
| 33 | 0.268 | 11 | 0.888 | 1.3 | 0.663 | -- | -1.02 | 0.153 | 23.2 | 22.4 | 1742 | -- | -- |
| 33.77 | 0.271 | 11 | 1.15 | 1.3 | 0.642 | -- | -- | 0.204 | 23.2 | 20.32 | 1791 | -- | -- |
| 106.9 | 0.482 | 11 | 0.733 | -- | 1.59 | -- | -1.15 | 0.032 | -- | 16.6 | 850 | -- | -- |
| 43 | 0.307 | 10.9 | 1.36 | 1.33 | -- | -0.677 | -- | 0.354 | 23.1 | -- | -- | -- | -- |
| 44.96 | 0.314 | 10.9 | 1.39 | 1.33 | -- | -- | -- | 0.357 | 23.1 | -- | -- | -- | -- |
| 108.13 | 0.484 | 10.9 | 0.979 | -- | 1.55 | -- | -- | 0.0922 | -- | 16.61 | 852 | -- | -- |
| 40.42 | 0.296 | 11 | -- | 1.3 | 1.18 | -- | -- | -0.156 | 23 | 13.11 | 47322 | -- | -- |
| 155.13 | 0.582 | 10.9 | 1.42 | -- | -- | -- | -- | 0.368 | -- | -- | -- | -- | -- |
| 96.03 | 0.458 | 11 | -- | 1.34 | -- | -- | -- | 0.202 | 23.2 | -- | -- | -- | -- |
| 129.97 | 0.531 | 11 | -- | -- | 2.07 | -- | -- | -0.0597 | -- | 14.9 | 864 | -- | -- |
| 208.57 | 0.674 | 10.9 | -- | -- | -- | -- | -- | 0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 2 | 30.04 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 12 | 30.76 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 13 | 30.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 14 | 30.81 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 15 | 30.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 8 |
| 17 | 30.86 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 9 |
| 19 | 30.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 29 | 30.92 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 14 |
| 35 | 30.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 37 | 30.93 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 83 | 31.04 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 17 |
| 112 | 31.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 119 | 31.10 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 140 | 31.14 | temperature | 25 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 141 | 31.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 4 | 19 |
| 155 | 31.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 6 |
| 157 | 31.17 | temperature | 25 | 4320 | > th | dose independent | sin | 0 | NA |
| 159 | 31.17 | temperature | 25 | 4320 | < th | dose independent | sin | 0 | NA |
| 186 | 31.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 9 |
| 220 | 31.23 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 9 |
| 235 | 31.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 2 |
| 256 | 31.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 267 | 31.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 300 | 31.29 | radiation | 40 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 388 | 31.36 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 389 | 31.36 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 445 | 31.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 6 |
| 449 | 31.39 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 517 | 31.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 598 | 31.49 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 615 | 31.50 | radiation | 20 | 30 | < th | dose independent | rect. | 5 | 15 |
| 672 | 31.53 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 714 | 31.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 717 | 31.55 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 736 | 31.55 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 767 | 31.57 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 20 |
| 771 | 31.57 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 856 | 31.61 | humidity | 70 | 270 | > th | dose independent | rect. | 18 | 8 |
| 863 | 31.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 909 | 31.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 918 | 31.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 1 |