BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0155200 Os12g0155200|AK067300
(129 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22400.1 | chr5:7423050-7425335 REVERSE LENGTH=467 219 2e-58
AT3G11490.1 | chr3:3617523-3619567 REVERSE LENGTH=436 215 4e-57
AT4G03100.1 | chr4:1374361-1375913 FORWARD LENGTH=431 214 1e-56
AT2G46710.1 | chr2:19192105-19194656 FORWARD LENGTH=456 211 1e-55
AT1G08340.1 | chr1:2631308-2632669 FORWARD LENGTH=332 210 2e-55
>AT5G22400.1 | chr5:7423050-7425335 REVERSE LENGTH=467
Length = 466
Score = 219 bits (559), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 103/125 (82%), Positives = 113/125 (90%)
Query: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
MEIGWPT+V+HVAHVTFDRF+GFLGLPVEFEPEVPRRAPSASA+VFGVSTESMQ SYDSR
Sbjct: 115 MEIGWPTNVRHVAHVTFDRFNGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSYDSR 174
Query: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
GN VPTILL+MQ LY QGGL+AEGIFR+ AENS+EE VR+QLN G +PE IDVHCLAGL
Sbjct: 175 GNCVPTILLLMQNCLYSQGGLQAEGIFRLTAENSEEEAVREQLNRGFIPERIDVHCLAGL 234
Query: 121 IKVSF 125
IK F
Sbjct: 235 IKAWF 239
>AT3G11490.1 | chr3:3617523-3619567 REVERSE LENGTH=436
Length = 435
Score = 215 bits (548), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 101/125 (80%), Positives = 110/125 (88%)
Query: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
MEIG PTDV+HVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASA+VFGVSTESMQ SYD+R
Sbjct: 91 MEIGVPTDVRHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASATVFGVSTESMQLSYDTR 150
Query: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
GN VPTILLMMQ LY +GGLR EGIFRIN EN QEE +R++LN GI+P+ IDVHCLA L
Sbjct: 151 GNIVPTILLMMQSHLYSRGGLRVEGIFRINGENGQEEYIREELNKGIIPDNIDVHCLASL 210
Query: 121 IKVSF 125
IK F
Sbjct: 211 IKAWF 215
>AT4G03100.1 | chr4:1374361-1375913 FORWARD LENGTH=431
Length = 430
Score = 214 bits (545), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 99/125 (79%), Positives = 107/125 (85%)
Query: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
MEIGWPT+V+H+ HVTFDRFHGFLGLP E + E+P R PSAS SVFGVS ESMQCSYD +
Sbjct: 78 MEIGWPTNVRHITHVTFDRFHGFLGLPHELQVEIPCRVPSASVSVFGVSAESMQCSYDEK 137
Query: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
GNSVPTILL+MQ RLY Q GL+AEGIFRIN ENSQEE VRDQLN GIVPE IDVHCLAGL
Sbjct: 138 GNSVPTILLLMQERLYSQQGLKAEGIFRINPENSQEEHVRDQLNRGIVPENIDVHCLAGL 197
Query: 121 IKVSF 125
IK F
Sbjct: 198 IKAWF 202
>AT2G46710.1 | chr2:19192105-19194656 FORWARD LENGTH=456
Length = 455
Score = 211 bits (536), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 97/125 (77%), Positives = 109/125 (87%)
Query: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
M+IGWPT+V+HV+HVTFDRF+GFLGLP E EPEVP RAPSAS SVFGVS +SMQCSYD R
Sbjct: 103 MDIGWPTEVKHVSHVTFDRFNGFLGLPSELEPEVPPRAPSASVSVFGVSAKSMQCSYDDR 162
Query: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
GNSVPTILL MQ+RLY +GGL+AEGIFRIN +N +EE VR QLN G+VP GIDVHCLAGL
Sbjct: 163 GNSVPTILLRMQKRLYTEGGLKAEGIFRINPDNGKEEHVRRQLNCGVVPRGIDVHCLAGL 222
Query: 121 IKVSF 125
IK F
Sbjct: 223 IKAWF 227
>AT1G08340.1 | chr1:2631308-2632669 FORWARD LENGTH=332
Length = 331
Score = 210 bits (534), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 96/125 (76%), Positives = 112/125 (89%)
Query: 1 MEIGWPTDVQHVAHVTFDRFHGFLGLPVEFEPEVPRRAPSASASVFGVSTESMQCSYDSR 60
M+IG PT+++HVAHVTFDRF GFLGLP EFEP+VPR+APSASA+VFGVSTESMQ SYDSR
Sbjct: 1 MDIGGPTNIRHVAHVTFDRFDGFLGLPSEFEPDVPRKAPSASATVFGVSTESMQLSYDSR 60
Query: 61 GNSVPTILLMMQRRLYEQGGLRAEGIFRINAENSQEELVRDQLNGGIVPEGIDVHCLAGL 120
GN VP ILL++Q RLY+QGGL+AEG+FRI ENS+EE VR+QLN GI+P+GIDVHCLAGL
Sbjct: 61 GNCVPVILLLLQSRLYDQGGLQAEGVFRITGENSEEEFVREQLNKGIIPDGIDVHCLAGL 120
Query: 121 IKVSF 125
IK F
Sbjct: 121 IKAWF 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,776,443
Number of extensions: 103122
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 5
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)