BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0456700 Os12g0456700|AK119478
(456 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0456700 Glycerophosphoryl diester phosphodiesterase fa... 916 0.0
Os08g0503200 Glycerophosphoryl diester phosphodiesterase fa... 575 e-164
Os04g0472300 Glycerophosphoryl diester phosphodiesterase fa... 464 e-131
Os02g0588500 Glycerophosphoryl diester phosphodiesterase fa... 416 e-116
Os09g0339800 Glycerophosphoryl diester phosphodiesterase fa... 325 4e-89
Os02g0187400 Glycerophosphoryl diester phosphodiesterase fa... 268 9e-72
Os01g0763600 Glycerophosphoryl diester phosphodiesterase fa... 96 5e-20
Os03g0603600 Glycerophosphoryl diester phosphodiesterase fa... 89 8e-18
>Os12g0456700 Glycerophosphoryl diester phosphodiesterase family protein
Length = 456
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 YDPLEEYLSFVSNGGFSVDGVLTDHPLTASEAIGCFTNLNTSRKTDHGNILIISHNGASG 60
YDPLEEYLSFVSNGGFSVDGVLTDHPLTASEAIGCFTNLNTSRKTDHGNILIISHNGASG
Sbjct: 1 YDPLEEYLSFVSNGGFSVDGVLTDHPLTASEAIGCFTNLNTSRKTDHGNILIISHNGASG 60
Query: 61 DYPDCTDLAYEKAVGDGADVIDCSIEMTKDGIPICMSSINLYDSTDVQNSKFSSLASVVP 120
DYPDCTDLAYEKAVGDGADVIDCSIEMTKDGIPICMSSINLYDSTDVQNSKFSSLASVVP
Sbjct: 61 DYPDCTDLAYEKAVGDGADVIDCSIEMTKDGIPICMSSINLYDSTDVQNSKFSSLASVVP 120
Query: 121 EIQTKPGIFTFNLTWEEISTLRPKITHPYHDFVRNPRYANQGKFFKLSDFLTYAKDKDLS 180
EIQTKPGIFTFNLTWEEISTLRPKITHPYHDFVRNPRYANQGKFFKLSDFLTYAKDKDLS
Sbjct: 121 EIQTKPGIFTFNLTWEEISTLRPKITHPYHDFVRNPRYANQGKFFKLSDFLTYAKDKDLS 180
Query: 181 GIMIIMKNAAFMAKSLGFDVVDLVTTALSNAGYDNMDPTTKNNKEIMIQSKDSAVLVKLK 240
GIMIIMKNAAFMAKSLGFDVVDLVTTALSNAGYDNMDPTTKNNKEIMIQSKDSAVLVKLK
Sbjct: 181 GIMIIMKNAAFMAKSLGFDVVDLVTTALSNAGYDNMDPTTKNNKEIMIQSKDSAVLVKLK 240
Query: 241 QRLTQCKLVYSLPLKVGDVSDSCVADIKKFADAVIVDRESVFAESKGFIIRKSKVVEDVQ 300
QRLTQCKLVYSLPLKVGDVSDSCVADIKKFADAVIVDRESVFAESKGFIIRKSKVVEDVQ
Sbjct: 241 QRLTQCKLVYSLPLKVGDVSDSCVADIKKFADAVIVDRESVFAESKGFIIRKSKVVEDVQ 300
Query: 301 SAGLAVYVEVFRNEYVSPPVDFFADGTVEINNYVQLVHVDGFITDFPKTVRRYKMNTCTR 360
SAGLAVYVEVFRNEYVSPPVDFFADGTVEINNYVQLVHVDGFITDFPKTVRRYKMNTCTR
Sbjct: 301 SAGLAVYVEVFRNEYVSPPVDFFADGTVEINNYVQLVHVDGFITDFPKTVRRYKMNTCTR 360
Query: 361 QGDGTSTSMKQVPIGDLAQLLDAECSTGGMLPALAPMPVLNSSDVIEPPLPAAEPKSAAG 420
QGDGTSTSMKQVPIGDLAQLLDAECSTGGMLPALAPMPVLNSSDVIEPPLPAAEPKSAAG
Sbjct: 361 QGDGTSTSMKQVPIGDLAQLLDAECSTGGMLPALAPMPVLNSSDVIEPPLPAAEPKSAAG 420
Query: 421 SSATNACVVGVLAPPPLFSSSREYV 445
SSATNACVVGVLAPPPLFSSSREYV
Sbjct: 421 SSATNACVVGVLAPPPLFSSSREYV 445
>Os08g0503200 Glycerophosphoryl diester phosphodiesterase family protein
Length = 778
Score = 575 bits (1483), Expect = e-164, Method: Compositional matrix adjust.
Identities = 285/430 (66%), Positives = 344/430 (80%), Gaps = 10/430 (2%)
Query: 1 YDPLEEYLSFVSNGGFSVDGVLTDHPLTASEAIGCFTNLNTSRKTDHGNILIISHNGASG 60
YDPLEEYL FV + FSVDGVL++ PLTA+ AIGCFTNLN S KTDHG+ LIISHNGASG
Sbjct: 321 YDPLEEYLHFVGSDNFSVDGVLSEFPLTAAAAIGCFTNLNVSSKTDHGSPLIISHNGASG 380
Query: 61 DYPDCTDLAYEKAVGDGADVIDCSIEMTKDGIPICMSSINLYDSTDVQNSKFSSLASVVP 120
DYPDCTDLAY+KAV DGADVIDCSI+MT DG+P+CMSSINL+++T+VQ + FS+ AS+
Sbjct: 381 DYPDCTDLAYQKAVDDGADVIDCSIQMTSDGVPVCMSSINLFETTNVQRTPFSNRASIFK 440
Query: 121 EIQTKPGIFTFNLTWEEIST--LRPKITHP--YHDFVRNPRYANQGKFFKLSDFLTYAKD 176
+IQ PGIFTFNLTW +IS+ LRPKI+ P + VRNP + N G FF+LSDFLT+AKD
Sbjct: 441 DIQPTPGIFTFNLTWADISSSDLRPKISSPESIYYLVRNPVHKNAGNFFRLSDFLTFAKD 500
Query: 177 KDLSGIMIIMKNAAFMAKSLGFDVVDLVTTALSNAGYDNMDPTTKNNKEIMIQSKDSAVL 236
KDLSGIMII+KNA FMA SLGFDVVD VT ALS+AGY+N T KE+MIQS+DSAVL
Sbjct: 501 KDLSGIMIIIKNAVFMANSLGFDVVDSVTKALSDAGYNNQ---TTKAKEVMIQSEDSAVL 557
Query: 237 VKLKQRLTQCKLVYSLPLKVGDVSDSCVADIKKFADAVIVDRESVFAESKGFIIRKSKVV 296
V LKQ T+ KLVY+LP +GD S S + D+KKFADAVIVDRES+F ES+GFI++++ +V
Sbjct: 558 VNLKQLETKYKLVYTLPSTIGDASASSLVDVKKFADAVIVDRESIFPESQGFIMKETNLV 617
Query: 297 EDVQSAGLAVYVEVFRNEYVSPPVDFFADGTVEINNYVQLVHVDGFITDFPKTVRRYKMN 356
+D++SAGLA+Y +VFRNE+VSPP DFF+D TVEIN+YVQ V++DG ITDFPKTVRRYKMN
Sbjct: 618 KDLRSAGLAIYAQVFRNEFVSPPWDFFSDVTVEINSYVQSVNIDGIITDFPKTVRRYKMN 677
Query: 357 TCTRQGDGTSTSMKQVPIGDLAQLLDAECSTGGMLPALAPMPVLNSSDVIEPPLPAAEPK 416
+CT G + M IG LAQLL+ + PALAPMPVLNSSDV EPP P+A PK
Sbjct: 678 SCTGLGVNMPSYMNPAEIGGLAQLLNG---SQAQPPALAPMPVLNSSDVTEPPFPSAAPK 734
Query: 417 SAAGSSATNA 426
+A G +A +
Sbjct: 735 NAPGGAANGS 744
>Os04g0472300 Glycerophosphoryl diester phosphodiesterase family protein
Length = 740
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 244/439 (55%), Positives = 306/439 (69%), Gaps = 17/439 (3%)
Query: 1 YDPLEEYLSFVSNGGFSVDGVLTDHPLTASEAIGCFTNLNTSRKTDHGNILIISHNGASG 60
YDPL EYLSF+ NG FSVDGVLTD P+T SEAIGCFTNL S KTDHG LIISHNGASG
Sbjct: 304 YDPLAEYLSFIDNGAFSVDGVLTDFPVTPSEAIGCFTNLKKS-KTDHGKPLIISHNGASG 362
Query: 61 DYPDCTDLAYEKAVGDGADVIDCSIEMTKDGIPICMSSINLYDSTDVQNSKFSSLASVVP 120
DYP CTDLAY+KAV DGADVIDC +++TKDGIPICMSSINL D T V S+F+S +V+
Sbjct: 363 DYPACTDLAYQKAVDDGADVIDCPVQLTKDGIPICMSSINLMDDTTVAKSQFASQTAVIK 422
Query: 121 EIQTKPGIFTFNLTWEEI-STLRPKITHPYHDFV--RNPRYANQGKFFKLSDFLTYAKDK 177
+I++ G+FTFNLTW++I LRPKI+ P+ F RNPRY N G F +LSDFL + KDK
Sbjct: 423 DIESVLGVFTFNLTWDDIVKNLRPKISTPFSSFKLDRNPRYRNAGNFMRLSDFLDFTKDK 482
Query: 178 DLSGIMIIMKNAAFMAKSLGFDVVDLVTTALSNAGYDNMDPTTKNNKEIMIQSKDSAVLV 237
DLSGIMI +++AAF+A+ LGFD+VD V L AGY N + +++MIQS +S+VLV
Sbjct: 483 DLSGIMISVEHAAFVAEELGFDMVDSVIKTLDAAGYSN-----QTAQKVMIQSSNSSVLV 537
Query: 238 KLKQRLTQCKLVYSLPLKVGDVSDSCVADIKKFADAVIVDRESVFAESKGFIIRKSKVVE 297
K KQ+ T+ LVY + +V D + S +A IKKFADAV V+ S+F E++ F ++ +VE
Sbjct: 538 KFKQQ-TKYDLVYMINEEVKDAAPSSLAAIKKFADAVSVEGNSIFPENRHFTTYQTNLVE 596
Query: 298 DVQSAGLAVYVEVFRNEYVSPPVDFFADGTVEINNYVQLVHVDGFITDFPKTVRRYKMNT 357
+Q+AGL VYV NE+ S P DFF+D T +IN YVQ V+G ITDFP T RRYK+NT
Sbjct: 597 SLQNAGLPVYVYTLMNEFASQPYDFFSDATAQINAYVQGAGVNGVITDFPATARRYKLNT 656
Query: 358 CTRQGDGTSTSMKQVPIGDLAQLLDAECSTGGMLPALAPMPVLNSSDVIEPPLP---AAE 414
C G+ T + M GDL Q++ S PA++PMP+L SDV EPPLP A+
Sbjct: 657 CMHMGNNTPSFMAPARPGDLLQII----SKPAQPPAMSPMPLLTGSDVAEPPLPPARTAQ 712
Query: 415 PKSAAGSSATNACVVGVLA 433
S A +A +V LA
Sbjct: 713 APSLASRMQAHAAIVVTLA 731
>Os02g0588500 Glycerophosphoryl diester phosphodiesterase family protein
Length = 749
Score = 416 bits (1069), Expect = e-116, Method: Compositional matrix adjust.
Identities = 233/433 (53%), Positives = 302/433 (69%), Gaps = 18/433 (4%)
Query: 1 YDPLEEYLSFVSNGGFSVDGVLTDHPLTASEAIGCFTNLNTSRKTDHGNILIISHNGASG 60
YDPL EYL+F+ NG FSVDGVLTD P+T SEAIGCF+NLN S KTD+ LIISHNGASG
Sbjct: 306 YDPLTEYLNFIDNGAFSVDGVLTDFPITPSEAIGCFSNLNNS-KTDNAKPLIISHNGASG 364
Query: 61 DYPDCTDLAYEKAVGDGADVIDCSIEMTKDGIPICMSSINLYDSTDVQNSKFSSLASVVP 120
DYPDCTDLAY+KAV DGADVIDC +++TKDGIPICMSSI+L D T V S+FSS +V+
Sbjct: 365 DYPDCTDLAYQKAVTDGADVIDCPVQVTKDGIPICMSSIDLMDVTTVSTSQFSSQTTVIK 424
Query: 121 EIQTKPGIFTFNLTWEEIS-TLRPKITHPY--HDFVRNPRYANQGKFFKLSDFLTYAKDK 177
+I+ G+++FNLTW++I+ L+PKI++P D RNPR N G F +LSDFL +AK K
Sbjct: 425 DIKNGAGVYSFNLTWDDIAKNLKPKISNPMTTFDVYRNPRNKNAGSFMRLSDFLAFAKGK 484
Query: 178 DLSGIMIIMKNAAFMAKSLGFDVVDLVTTALSNAGYDNMDPTTKNNKEIMIQSKDSAVLV 237
+LSG+MI +++AAFMA+ LGF VVD V AL ++GY + + +++MIQS +S+VLV
Sbjct: 485 ELSGVMISIEHAAFMAEKLGFGVVDAVIKALDDSGY-----SKQTAQKVMIQSTNSSVLV 539
Query: 238 KLKQRLTQCKLVYSLPLKVGDVSDSCVADIKKFADAVIVDRESVFAESKGFIIRK-SKVV 296
K K++ T+ LVY L V D + S +ADIKKFA+AV V S++ ESK ++I + S +V
Sbjct: 540 KFKEQ-TKYNLVYMLEEDVRDAAPSSLADIKKFANAVSVRTTSIYPESKHYLINQTSHIV 598
Query: 297 EDVQSAGLAVYVEVFRNEYVSPPVDFFADGTVEINNYVQL--VHVDGFITDFPKTVRRYK 354
+ +QSAGL VYV V NE+VS P DFFAD T +IN YVQ VDG ITDFP TV RY+
Sbjct: 599 QTLQSAGLPVYVYVLMNEFVSQPNDFFADATTQINTYVQKKGAGVDGIITDFPATVHRYR 658
Query: 355 MNTCTRQGDGTSTSMKQVPIGDLA-QLLDAECSTGGMLPALAPMPVLNSSDVIEPPLPAA 413
++ CT + T M V G L+ ++D A+APMP+L SDV E PLP
Sbjct: 659 LSPCTSKESNLPTFMLPVQPGGLSGTIIDPAAQPP----AMAPMPLLTDSDVAESPLPPV 714
Query: 414 EPKSAAGSSATNA 426
+ +A A+ A
Sbjct: 715 KNVTAPAPGASRA 727
>Os09g0339800 Glycerophosphoryl diester phosphodiesterase family protein
Length = 636
Score = 325 bits (834), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 173/278 (62%), Positives = 195/278 (70%), Gaps = 53/278 (19%)
Query: 1 YDPLEEYLSFVSNGGFSVDGVLTDHPLTASEAIGCFTNLNTSRKTDHGNILIISHNGASG 60
YDPL EYLSFVS+GGFSVDGVLTD PLTASEAIG N LIISHNG SG
Sbjct: 303 YDPLGEYLSFVSDGGFSVDGVLTDFPLTASEAIG--------------NPLIISHNGGSG 348
Query: 61 DYPDCTDLAYEKAVGDGADVIDCSIEMTKDGIPICMSSINLYDSTDVQNSKFSSLASVVP 120
DYP CTDLAYE AV DGADVIDCSI+MTKDGIPICMSSI+L +TDVQ SKF SL SV+P
Sbjct: 349 DYPGCTDLAYENAVRDGADVIDCSIQMTKDGIPICMSSIDLLATTDVQQSKFCSLLSVIP 408
Query: 121 EIQTKPGIFTFNLTWEEISTLRPKITHPYHDFV--RNPRYANQGKFFKLSDFLTYAKDKD 178
EIQ+K GIFTFNLTW++I+ LRPKI+ P D+V RNPRY N GKF KLS+FLTYAKDK+
Sbjct: 409 EIQSKKGIFTFNLTWDDINILRPKISSPLSDYVMLRNPRYTNHGKFLKLSEFLTYAKDKE 468
Query: 179 LSGIMIIMKNAAFMAKSLGFDVVDLVTTALSNAGYDNMDPTTKNNKEIMIQSKDSAVLVK 238
LSGIMI ++NAAFMA SLGFDVVDL
Sbjct: 469 LSGIMITIENAAFMAASLGFDVVDL----------------------------------- 493
Query: 239 LKQRLTQCKLVYSLPLKVGDVSDSCVADIKKFADAVIV 276
+ TQ KLVY+LPL + D SDS VA+I KFA+AV++
Sbjct: 494 --HQKTQYKLVYTLPLNIEDASDSSVAEINKFAEAVML 529
>Os02g0187400 Glycerophosphoryl diester phosphodiesterase family protein
Length = 703
Score = 268 bits (684), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 153/365 (41%), Positives = 216/365 (59%), Gaps = 12/365 (3%)
Query: 1 YDPLEEYLSFVSNGGFSVDGVLTDHPLTASEAIGCFTNLNTSRKTDHGNI----LIISHN 56
+DP EYL ++ N FSVDGV+TD P TAS A+ C N + G LII+HN
Sbjct: 304 FDPSAEYLQYIGNANFSVDGVITDFPPTASGAVACLANTKGNPLPPPGGDGGRPLIITHN 363
Query: 57 GASGDYPDCTDLAYEKAVGDGADVIDCSIEMTKDGIPICMSSINLYDSTDVQNSKFSSLA 116
GASG YP TDLAY++AV DGAD+IDC++ M+KDG+ C S +L ++ ++ F +
Sbjct: 364 GASGVYPGSTDLAYQQAVKDGADIIDCAVRMSKDGVAFCQPSADL-STSTTASTSFMTKI 422
Query: 117 SVVPEIQTKPGIFTFNLTWEEISTLRPKITHPYHD--FVRNPRYANQGKFFKLSDFLTYA 174
S V EIQ K GIF+F+LTW EI TL+P + PY RNP N GKF L +FL A
Sbjct: 423 STVSEIQNKSGIFSFDLTWSEIQTLKPDLLGPYTQAGLKRNPAAKNAGKFVTLPEFLDLA 482
Query: 175 KDKDLSGIMIIMKNAAFMAKSLGFDVVDLVTTALSNAGYDNMDPTTKNNKEIMIQSKDSA 234
K ++SGIM+ M++A+F+AK G +VD V+ AL+NA YD + E+M+ S D++
Sbjct: 483 KATNVSGIMVEMEHASFLAKR-GLGLVDAVSGALANASYDK---EGGHLPELMVVSDDTS 538
Query: 235 VLVKLKQRLTQCKLVYSLPLKVGDVSDSCVADIKKFADAVIVDRESVFAESKGFIIRKSK 294
VL K + + V + + D S V +IK+FA AV V R S+ + F+ R +
Sbjct: 539 VLAAFK-KFPAFRRVLMVDETISDASAPSVEEIKQFATAVTVGRGSIAQVNGFFLTRFTD 597
Query: 295 VVEDVQSAGLAVYVEVFRNEYVSPPVDFFADGTVEINNYVQLVHVDGFITDFPKTVRRYK 354
V + + +A L VYV V RNE+++ D++AD +EI Y V DG IT++P T Y
Sbjct: 598 VADRMHAANLTVYVGVLRNEFMNLGFDYWADPIIEIATYAFHVMADGLITEYPATAATYF 657
Query: 355 MNTCT 359
+ C+
Sbjct: 658 RSPCS 662
>Os01g0763600 Glycerophosphoryl diester phosphodiesterase family protein
Length = 391
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 148/335 (44%), Gaps = 22/335 (6%)
Query: 53 ISHNGASGDYPDCTDLAYEKAVGDGADVIDCSIEMTKDGIPICMSSINLYDSTDVQNSKF 112
I+H G++G+ P+ T AY +A+ +GAD I+ I +KDG IC + L +TDV + K
Sbjct: 47 IAHRGSNGEIPEETAAAYLRAIEEGADFIETDILASKDGALICFHDVTLDATTDVASRKE 106
Query: 113 SSLASVVPEIQ--TKPGIFTFNLTWEEISTLRPKITHPYHDFVRNPRYANQGKFFKLSDF 170
S E++ G F + T EE+ TL+ +P+ R+ +Y + +F
Sbjct: 107 FSNRRRTYEVEWFNATGWFVVDFTLEELKTLKVNQRYPF----RDQQYNGKFSIITFEEF 162
Query: 171 LTYAKDKDLS-GIMIIMKNAAFMAKSLGFD----VVDLVTTALSNAGYDNMDPTTKNNKE 225
++ A D + GI MK+ F+ K + +D D L GY + K+
Sbjct: 163 ISIALDASRTVGIYPEMKDPVFINKHVKWDGGKKFEDKFVDTLLKYGYKGQYMSENWLKQ 222
Query: 226 -IMIQSKDSAVLVKLKQRLTQCK--LVYSLPLKVGD--------VSDSCVADIKKFADAV 274
+ IQS LV + K L+ ++ D SD +A I + +
Sbjct: 223 PLFIQSFAPTSLVHASKLTDSPKIFLIDDFSVRTQDTNQSYWDITSDDYLAYISNYVVGL 282
Query: 275 IVDRESVFAESKGFIIRKSKVVEDVQSAGLAVYVEVFRNEYVSPPVDFFADGTVEINNYV 334
+++V +K + + + +V + L V+ +RNE ++F D E + ++
Sbjct: 283 GPWKDTVVPAAKNYTMAPTDLVARAHAHNLQVHPYTYRNENQFLHLNFHQDPYAEYDFWI 342
Query: 335 QLVHVDGFITDFPKTVRRYKMNTCTRQGDGTSTSM 369
+ VDG TDF ++ RY+ D T+ S+
Sbjct: 343 NSMGVDGLFTDFTGSLHRYQELVAPHAKDETANSL 377
>Os03g0603600 Glycerophosphoryl diester phosphodiesterase family protein
Length = 391
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 147/325 (45%), Gaps = 24/325 (7%)
Query: 53 ISHNGASGDYPDCTDLAYEKAVGDGADVIDCSIEMTKDGIPICMSSINLYDSTDVQN-SK 111
I+H G++G+ P+ T AY +A+ +GAD I+ I TKDG IC + L +TD+ N ++
Sbjct: 47 IAHRGSNGEIPEETTAAYLRAIEEGADFIESDILATKDGHLICFHDVILDATTDIANRTE 106
Query: 112 FSSLASVVP-EIQTKPGIFTFNLTWEEISTLRPKITHPYHDFVRNPRYANQGKFFKLSDF 170
F++ E Q G F + T EE+ +LR K + + D N +Y + ++
Sbjct: 107 FANRKRTYEVERQNVTGWFVVDFTLEELKSLRVKQRYNFRDQQYNGKY----QIITFDEY 162
Query: 171 LTYAKDKD-LSGIMIIMKNAAFMAKSL----GFDVVDLVTTALSNAGYDNMDPTTKNNKE 225
+ A D + GI +KN F+ + + G D L GY + K+
Sbjct: 163 ILIALYADRVVGIYPELKNPIFINEHVKWSDGKKFEDKFVQTLLKYGYKGEYMSEDWLKQ 222
Query: 226 -IMIQSKDSAVLVKLKQRLTQCK--LVYSLPLKVGD--------VSDSCVADIKKFADAV 274
+ IQS + L+ + K L+ ++ D SD+ +A I+K+ +
Sbjct: 223 PLFIQSFAPSSLIYMSNMTNSPKIFLIDDTTVRTQDTNQSYYEITSDAYLAFIRKYIVGI 282
Query: 275 IVDRESVFAESKGFIIRKSKVVEDVQSAGLAVYVEVFRNEYVSPPVDFFADGTVEINNYV 334
++++ ++ + +V + L V+ FRNE + DF D +E ++
Sbjct: 283 GPWKDTIVPPINNYLGPPTDLVARAHALNLQVHPYTFRNENMFLHFDFHQDPYLEYEYWL 342
Query: 335 QLVHVDGFITDFPKTVRRYKMNTCT 359
+ VDG TDF T+ R++ CT
Sbjct: 343 GEIGVDGLFTDFTGTLHRFQ--ECT 365
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,299,760
Number of extensions: 644931
Number of successful extensions: 2224
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2193
Number of HSP's successfully gapped: 8
Length of query: 456
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 352
Effective length of database: 11,605,545
Effective search space: 4085151840
Effective search space used: 4085151840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)