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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0187400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycerophosphoryl diester phosphodiesterase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.035) R2 : 0.334
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.56 (0.305) R2dE : 0.334 R2E : 0.334
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00045 (0.0742) R2dN8 : -9.99e-07 R2N8 : 3.72e-05
σ : 0.655
deviance : 198
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 90
memory length : 1480
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.24
open length of G : 0.467

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.24 0.639 3.41 0.349 0.00589 3.15 1.06 4.87 0.0272 16.2 90.41 1471 2.98 0.75
194.77 0.65 3.42 0.317 0.0424 3.58 0.812 -- 0.0416 15.8 90.11 1466 3 0.713
188.03 0.639 3.41 0.378 0.0175 3.46 -- 4.78 0.032 15.6 90.48 1482 2.95 0.73
195.64 0.651 3.41 0.356 0.0373 3.87 -- -- 0.0548 16.1 90.13 1473 3.05 0.669
188.02 0.639 3.4 0.37 -- 3.46 -- 4.9 0.0385 -- 90.53 1483 2.94 0.725
287.33 0.795 3.45 0.459 0.0701 -- -0.802 -- -0.11 3.94 -- -- -- --
288.88 0.796 3.44 0.47 0.103 -- -- -- -0.106 6.97 -- -- -- --
195.19 0.651 3.4 0.378 -- 4.48 -- -- 0.0656 -- 90.22 1490 3.05 0.668
198.05 0.655 3.42 -- 0.0448 4.28 -- -- -0.00285 16.6 90 1475 3.24 0.467
289.44 0.795 3.45 0.472 -- -- -- -- -0.104 -- -- -- -- --
294.71 0.803 3.46 -- 0.108 -- -- -- -0.158 6.7 -- -- -- --
198 0.655 3.42 -- -- 4.56 -- -- -0.00045 -- 90 1480 3.24 0.467
295.32 0.802 3.46 -- -- -- -- -- -0.156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.67 humidity 90 1440 < th dose dependent rect. 3 1
2 196.59 wind 5 4320 > th dose dependent rect. 20 2
8 199.09 wind 7 4320 < th dose independent rect. 19 2
13 199.95 wind 7 4320 < th dose independent rect. 18 9
18 200.54 wind 9 4320 > th dose dependent rect. 19 9
20 200.68 wind 9 4320 > th dose dependent rect. 20 1
22 200.71 wind 7 4320 > th dose independent rect. 18 4
24 200.88 humidity 90 1440 < th dose dependent rect. 24 7
52 201.74 wind 7 4320 > th dose independent rect. 18 9
58 201.90 wind 5 4320 > th dose independent rect. 21 1
80 202.55 humidity 90 1440 < th dose dependent rect. 2 5
103 203.08 humidity 90 1440 < th dose dependent rect. 24 4
121 203.65 atmosphere 995 14400 < th dose independent rect. 17 1
125 203.65 atmosphere 995 14400 < th dose dependent rect. 17 1
166 204.37 atmosphere 995 14400 > th dose independent rect. 16 1
167 204.40 atmosphere 995 14400 > th dose independent rect. 16 3
268 206.71 atmosphere 995 14400 > th dose independent rect. 8 11
294 207.32 humidity 90 1440 < th dose independent rect. 2 1
354 208.68 humidity 70 1440 > th dose dependent rect. 3 1
366 209.12 humidity 90 1440 < th dose dependent rect. 5 1
384 209.48 atmosphere 995 14400 < th dose independent rect. 24 16
394 209.57 atmosphere 995 14400 < th dose independent rect. 4 11
396 209.58 atmosphere 995 14400 > th dose independent rect. 19 21
398 209.60 atmosphere 995 14400 > th dose independent rect. 4 11
401 209.61 atmosphere 995 14400 > th dose independent rect. 22 18
408 209.66 atmosphere 995 14400 > th dose independent rect. 2 13
422 209.70 atmosphere 995 14400 < th dose dependent rect. 3 14
426 209.74 atmosphere 995 14400 < th dose dependent rect. 4 12
440 209.90 atmosphere 995 14400 < th dose dependent sin 1 NA
445 209.98 atmosphere 995 14400 > th dose independent sin 4 NA
449 210.11 atmosphere 995 14400 < th dose independent sin 4 NA
474 210.36 humidity 70 1440 > th dose dependent rect. 1 5
480 210.39 atmosphere 995 14400 < th dose dependent rect. 14 11
488 210.39 atmosphere 995 14400 < th dose dependent rect. 3 19
519 210.52 atmosphere 995 14400 < th dose dependent sin 19 NA
608 211.08 humidity 90 1440 < th dose dependent rect. 24 1
622 211.23 radiation 1 14400 < th dose dependent rect. 19 8
625 211.25 humidity 50 1440 > th dose dependent rect. 5 1
632 211.30 atmosphere 995 14400 > th dose independent no NA NA
634 211.30 atmosphere 995 14400 > th dose independent rect. 4 23
635 211.30 atmosphere 995 14400 > th dose independent rect. 7 23
636 211.30 atmosphere 995 14400 > th dose independent rect. 9 23
637 211.30 atmosphere 995 14400 > th dose independent rect. 11 23
638 211.30 atmosphere 995 14400 > th dose independent rect. 14 23
639 211.31 wind 7 4320 < th dose independent rect. 8 1
640 211.31 atmosphere 995 14400 > th dose independent rect. 11 21
664 211.34 atmosphere 995 14400 > th dose independent rect. 24 23
751 211.54 atmosphere 995 14400 > th dose independent rect. 14 18
755 211.55 humidity 90 1440 < th dose independent rect. 1 5
765 211.56 atmosphere 995 14400 < th dose independent no NA NA
767 211.56 atmosphere 995 14400 < th dose independent rect. 14 16
832 211.61 atmosphere 995 14400 < th dose independent rect. 1 23
845 211.66 temperature 20 4320 < th dose independent rect. 21 1
990 212.13 atmosphere 995 14400 > th dose independent sin 17 NA